View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_low_17 (Length: 336)

Name: NF1696_low_17
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_low_17
NF1696_low_17
[»] chr5 (12 HSPs)
chr5 (1-336)||(13389322-13389657)
chr5 (1-336)||(13385501-13385831)
chr5 (188-336)||(13412932-13413080)
chr5 (202-336)||(13419291-13419425)
chr5 (190-336)||(13453783-13453929)
chr5 (202-335)||(13426182-13426315)
chr5 (214-335)||(13446854-13446975)
chr5 (170-334)||(13393731-13393895)
chr5 (204-332)||(13373035-13373163)
chr5 (4-88)||(13393968-13394052)
chr5 (205-332)||(13378832-13378959)
chr5 (1-90)||(13425982-13426071)
[»] chr4 (2 HSPs)
chr4 (175-336)||(47601086-47601247)
chr4 (1-86)||(47600912-47600997)
[»] chr8 (1 HSPs)
chr8 (171-332)||(28430709-28430870)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 13389657 - 13389322
Alignment:
Q  1 ttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgattccatccaaagtacccaatgcagactataaaaacattaacataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13389657 ttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgataccatccaaagtacccaatgcagactataaaaacattaacataa 13389558  T
Q  101 ttagttcatgaattgattagcaatagcattgtcaatttccatataatagaaaattgaacaannnnnnnngtacctgcattttctcttggtcacgacttat 200  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  13389557 ttagttcatgaattgattagcaatagcattgtcaatttctgtataatagaaaattgaacaattttttttgtacctgcattttctcttggtcacgacttat 13389458  T
Q  201 cagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaatttc 300  Q
    |||||||||||| ||||| ||||||||||||||||| || |||||||| || ||||||||||| || || ||| | ||||| || |||||||| ||||||    
T  13389457 cagaaatgaatcggctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttc 13389358  T
Q  301 acagccatatggccaagtccaccaagaccaacaaca 336  Q
    |||||||| || ||||| ||||||||||||||||||    
T  13389357 acagccatgtgaccaagcccaccaagaccaacaaca 13389322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 13385831 - 13385501
Alignment:
Q  1 ttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgattccatccaaagtacccaatgcagactataaaaacattaacataa 100  Q
    |||| |||||||| ||| || |||| |||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  13385831 ttcagtaatccaagtagtggcaagacaggatgatttgctgaaacggtatcaatgataccatccaaagtacccagtgcagactataaaaacattaacataa 13385732  T
Q  101 ttagttcatgaattgattagcaatagcattgtcaatttccatataatagaaaattgaacaannnnnnnn-gtacctgcattttctcttggtcacgactta 199  Q
    ||| ||||||||||||||||||      ||||||||||   |||||||||| ||||||| |         ||||||||||||| ||||||||||||||||    
T  13385731 ttatttcatgaattgattagca------ttgtcaatttgagtataatagaatattgaactatttttttttgtacctgcattttatcttggtcacgactta 13385638  T
Q  200 tcagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaattt 299  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  13385637 tcagaaatgaatcagctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaattt 13385538  T
Q  300 cacagccatatggccaagtccaccaagaccaacaaca 336  Q
    ||||||||| || ||||| ||||||||||||||||||    
T  13385537 cacagccatgtgaccaagcccaccaagaccaacaaca 13385501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 188 - 336
Target Start/End: Original strand, 13412932 - 13413080
Alignment:
Q  188 ggtcacgacttatcagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagc 287  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13412932 ggtcactacttatcagaaatgaatcagctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagc 13413031  T
Q  288 tttggcgaatttcacagccatatggccaagtccaccaagaccaacaaca 336  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13413032 tttggcaaatttcacagccatatggccaagtccaccaagaccaacaaca 13413080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 202 - 336
Target Start/End: Original strand, 13419291 - 13419425
Alignment:
Q  202 agaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaatttca 301  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  13419291 agaaacgagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttca 13419390  T
Q  302 cagccatatggccaagtccaccaagaccaacaaca 336  Q
    |||||||||||||||||||||||||||||||||||    
T  13419391 cagccatatggccaagtccaccaagaccaacaaca 13419425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 13453783 - 13453929
Alignment:
Q  190 tcacgacttatcagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctt 289  Q
    ||||| ||||| |||||||| || ||||  |||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  13453783 tcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaagctt 13453882  T
Q  290 tggcgaatttcacagccatatggccaagtccaccaagaccaacaaca 336  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  13453883 tggcgaatttcacggccatatggccaagtccaccaagaccaacaaca 13453929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 202 - 335
Target Start/End: Original strand, 13426182 - 13426315
Alignment:
Q  202 agaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaatttca 301  Q
    ||||| || |||||||| || |||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  13426182 agaaacgagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttca 13426281  T
Q  302 cagccatatggccaagtccaccaagaccaacaac 335  Q
    |||||||||| |||||||||||||||||||||||    
T  13426282 cagccatatgaccaagtccaccaagaccaacaac 13426315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 13446854 - 13446975
Alignment:
Q  214 gctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcacagccatatggc 313  Q
    ||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| |    
T  13446854 gctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaaatttcacagccatatgac 13446953  T
Q  314 caagtccaccaagaccaacaac 335  Q
    ||||||||||||||||||||||    
T  13446954 caagtccaccaagaccaacaac 13446975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 170 - 334
Target Start/End: Complemental strand, 13393895 - 13393731
Alignment:
Q  170 gtacctgcattttctcttggtcacgacttatcagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggt 269  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||| | || |||||||||||| || |||||||| || |||||||||||||| ||    
T  13393895 gtacctgcattttatcttggtcatgacttataagaaatgaatcagctcctaggttttctattgcttctttctctttgttgggtgatgtactaattactgt 13393796  T
Q  270 cacattagcaccgaaagctttggcgaatttcacagccatatggccaagtccaccaagaccaacaa 334  Q
     |||||||| || |||||||| || || |||||| |||  || ||||||||||||||||||||||    
T  13393795 tacattagctccaaaagcttttgcaaacttcacacccaagtgaccaagtccaccaagaccaacaa 13393731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 13373035 - 13373163
Alignment:
Q  204 aaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcaca 303  Q
    |||||| |||||||| |||||||| || |||||||| | ||||||||| || || || || || || ||||||||||| ||||||||||  |||||||||    
T  13373035 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttggtaaatttcaca 13373134  T
Q  304 gccatatggccaagtccaccaagaccaac 332  Q
    |||||||| || | |||||||||||||||    
T  13373135 gccatatgacctaatccaccaagaccaac 13373163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 13394052 - 13393968
Alignment:
Q  4 aataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgattccatccaaagtacccaatgcagactataaaa 88  Q
    ||||| |||| ||| ||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||  |||| ||||||||    
T  13394052 aataaaccaactagaggtaagagaggatgatccgctgaaactgtatcgatgatgccatccaaagtacccatcgcagcctataaaa 13393968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 332
Target Start/End: Original strand, 13378832 - 13378959
Alignment:
Q  205 aatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcacag 304  Q
    ||||| |||||||| ||| |||| || |||||||| | ||||||||| || ||||| |  || || || ||| |||| || ||||||||||| |||||||    
T  13378832 aatgagtcagctcctaagcgttcaatggcttccttctttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcgaacttcacag 13378931  T
Q  305 ccatatggccaagtccaccaagaccaac 332  Q
    ||||||| || | |||||||||||||||    
T  13378932 ccatatgacctaatccaccaagaccaac 13378959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13425982 - 13426071
Alignment:
Q  1 ttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgattccatccaaagtacccaatgcagactataaaaac 90  Q
    |||||||| ||||| |  ||||||||||||||| |||| ||||| || ||||| || |||| ||||||||||| ||||| |||| |||||    
T  13425982 ttcaataaaccaatcaatggtaagataggatgacttgccgaaacagtgtcgataataccattcaaagtacccattgcagcctattaaaac 13426071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 47601086 - 47601247
Alignment:
Q  175 tgcattttctcttggtcacgacttatcagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtcacat 274  Q
    ||||| || ||||||||||||||||||| |||||| |||||||| |||  |||| ||||||| |||||||||||||| |||||||||||||| |||||||    
T  47601086 tgcatcttatcttggtcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacat 47601185  T
Q  275 tagcaccgaaagctttggcgaatttcacagccatatggccaagtccaccaagaccaacaaca 336  Q
    |||| || |||||||| || || || |||||||| || ||||||||||||||||||||||||    
T  47601186 tagccccaaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaaca 47601247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47600912 - 47600997
Alignment:
Q  1 ttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgattccatccaaagtacccaatgcagactataa 86  Q
    |||| |||||||||||| ||| ||| |||||| |  ||||||||||| || ||||| ||||||||||||  || ||||| ||||||    
T  47600912 ttcagtaatccaattagaggtgagagaggatgttcagctgaaactgtgtcaatgataccatccaaagtattcactgcagcctataa 47600997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 332
Target Start/End: Complemental strand, 28430870 - 28430709
Alignment:
Q  171 tacctgcattttctcttggtcacgacttatcagaaatgaatcagctcccaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtc 270  Q
    |||||||||||  ||||| ||||  || | || |||||| |||||||| |   |||| || |||||||| | ||||||||| || || ||||| || ||     
T  28430870 tacctgcatttgatcttgttcactgctaaccacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtt 28430771  T
Q  271 acattagcaccgaaagctttggcgaatttcacagccatatggccaagtccaccaagaccaac 332  Q
    || |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  28430770 accttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaac 28430709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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