View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_low_19 (Length: 316)

Name: NF1696_low_19
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_low_19
NF1696_low_19
[»] chr4 (7 HSPs)
chr4 (13-177)||(646021-646185)
chr4 (235-301)||(645896-645962)
chr4 (73-168)||(645889-645984)
chr4 (235-292)||(646046-646103)
chr4 (73-176)||(10214357-10214460)
chr4 (131-172)||(33389940-33389981)
chr4 (123-167)||(46250930-46250974)
[»] chr7 (3 HSPs)
chr7 (75-165)||(8722099-8722189)
chr7 (73-153)||(21517286-21517367)
chr7 (73-176)||(42252580-42252681)
[»] chr3 (4 HSPs)
chr3 (80-174)||(21594530-21594624)
chr3 (81-176)||(34996091-34996186)
chr3 (110-176)||(2594449-2594515)
chr3 (109-176)||(43368182-43368249)
[»] chr6 (4 HSPs)
chr6 (99-176)||(32279647-32279724)
chr6 (73-144)||(28907734-28907805)
chr6 (246-297)||(32279666-32279717)
chr6 (102-176)||(20437612-20437685)
[»] chr1 (2 HSPs)
chr1 (81-153)||(10427224-10427296)
chr1 (109-177)||(10427308-10427376)
[»] chr8 (3 HSPs)
chr8 (73-144)||(39199162-39199233)
chr8 (238-284)||(45521449-45521495)
chr8 (80-144)||(45521431-45521495)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 646185 - 646021
Alignment:
Q  13 aaaatcaccaaaacattgttttttatgccggggttagaaccccggaaaaaagatgtatattactatgtataaagaaagtagactcttttgagttgtcttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  646185 aaaatcaccaaaacattgttttttatgccggggttagaaccccggaaaaaatatgtatattactatatataaagaaagtagactcttttgagttgtcttt 646086  T
Q  113 ttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcattt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  646085 ttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcattt 646021  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 645962 - 645896
Alignment:
Q  235 ctcttttgggttgactttttctccttctaattacatccttaaacaaatttcaacataataatgctat 301  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  645962 ctcttttgggttgactttttctacttctaattacatccttaaacaaatttcaacataataatgctat 645896  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 645984 - 645889
Alignment:
Q  73 tactatgtataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttc 168  Q
    |||||| |||||||||| || ||||||||| |||| |||||||| |||||||||||| |||||||||||||||| ||||| |||  ||||||||||    
T  645984 tactatatataaagaaattatactcttttgggttgactttttctacttctaattacatccttaaacaaatttcaacataataatgctattttgttc 645889  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 646103 - 646046
Alignment:
Q  235 ctcttttgggttgactttttctccttctaattacatccttaaacaaatttcaacataa 292  Q
    |||||||| |||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  646103 ctcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataa 646046  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 10214460 - 10214357
Alignment:
Q  73 tactatgtataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgt 172  Q
    |||||| |||||||||| ||| |||||||| | ||  |||||||||||| ||||| ||||||||| |||||| |  |||| ||| |||||||||| ||||    
T  10214460 tactatatataaagaaaataggctcttttgggctgaatttttctccttccaattatacccttaaataaatttgactataagaatgttattttgttggtgt 10214361  T
Q  173 catt 176  Q
    ||||    
T  10214360 catt 10214357  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 33389981 - 33389940
Alignment:
Q  131 ccttaaacaaatttcatcataaaaatattattttgttcgtgt 172  Q
    |||||||||||||| || ||||||||||||||||||| ||||    
T  33389981 ccttaaacaaatttgattataaaaatattattttgttggtgt 33389940  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 46250974 - 46250930
Alignment:
Q  123 aattacacccttaaacaaatttcatcataaaaatattattttgtt 167  Q
    ||||| |||||||||||||||| ||||||| ||| ||||||||||    
T  46250974 aattatacccttaaacaaatttgatcataagaatgttattttgtt 46250930  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 8722189 - 8722099
Alignment:
Q  75 ctatgtataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttg 165  Q
    |||| ||||||||||||||| | ||||| |||||| ||||||||||| ||||| || ||||| ||||||| ||||||||||| ||||||||    
T  8722189 ctatatataaagaaagtagattgttttgggttgtccttttctccttccaattatacgcttaagcaaatttgatcataaaaatgttattttg 8722099  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 21517367 - 21517286
Alignment:
Q  73 tactatgtataaagaaagtagactcttttgagttgtc-tttttctccttctaattacacccttaaacaaatttcatcataaa 153  Q
    |||||| ||||||||||||||||  ||||  | || | |||||||| ||| ||| |||||||||||||||||| ||||||||    
T  21517367 tactatatataaagaaagtagaccgtttttggctgacttttttctcattccaataacacccttaaacaaatttaatcataaa 21517286  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 42252681 - 42252580
Alignment:
Q  73 tactatgtataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgt 172  Q
    |||||| ||||||||||||  ||| |||||||||| || |||| ||||| | ||  |||||||||||||||| |  |||| |||| ||||||||| | ||    
T  42252681 tactatatataaagaaagtgaactgttttgagttgactatttcaccttccactt--acccttaaacaaatttaactataagaatactattttgttggcgt 42252584  T
Q  173 catt 176  Q
    ||||    
T  42252583 catt 42252580  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 21594624 - 21594530
Alignment:
Q  80 tataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtca 174  Q
    ||||||||||||||| | ||||| |||| ||||||||||||| ||||| ||| || | ||||| | | |||||||||||||||||||| ||||||    
T  21594624 tataaagaaagtagattgttttgtgttgcctttttctccttccaattataccatttagcaaatatgaccataaaaatattattttgttggtgtca 21594530  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 34996186 - 34996091
Alignment:
Q  81 ataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcatt 176  Q
    |||||||||||||||  ||||| | ||  |||||||||||| ||||| |||||||| ||||||| | ||||| |||  ||||||||| ||||||||    
T  34996186 ataaagaaagtagaccgttttgggctggttttttctccttccaattatacccttaagcaaatttaaccataagaatgctattttgttggtgtcatt 34996091  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 2594449 - 2594515
Alignment:
Q  110 tttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcatt 176  Q
    |||||||||||| |||||||||||||| ||||||| | ||||| ||| |||||||| | ||||||||    
T  2594449 tttttctccttcaaattacacccttaatcaaatttgaccataacaatgttattttgctggtgtcatt 2594515  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 43368249 - 43368182
Alignment:
Q  109 ctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcatt 176  Q
    |||||||||||||| |||| ||  |||||||||||| || |||||||||||||| || | ||||||||    
T  43368249 ctttttctccttctcattatacttttaaacaaattttattataaaaatattattgtgctggtgtcatt 43368182  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 32279724 - 32279647
Alignment:
Q  99 tttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcatt 176  Q
    |||||| || ||||||||||||||||||| | |||||| ||||||| | ||||||||| |||||||||| ||||||||    
T  32279724 tttgagctgactttttctccttctaattatatccttaagcaaatttgaccataaaaatgttattttgttggtgtcatt 32279647  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 28907734 - 28907805
Alignment:
Q  73 tactatgtataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaattt 144  Q
    |||||| ||||||||||||||||| ||||| | || | ||||||| ||| ||||| |||||||| |||||||    
T  28907734 tactatttataaagaaagtagactgttttgggctgacattttctcattccaattatacccttaagcaaattt 28907805  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 32279717 - 32279666
Alignment:
Q  246 tgactttttctccttctaattacatccttaaacaaatttcaacataataatg 297  Q
    |||||||||||||||||||||| |||||||| ||||||| | ||||| ||||    
T  32279717 tgactttttctccttctaattatatccttaagcaaatttgaccataaaaatg 32279666  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 20437612 - 20437685
Alignment:
Q  102 gagttgtctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcatt 176  Q
    ||||||||||||| |  ||||||||| | ||||||||||||||  | |||||||| |||||||||| ||||||||    
T  20437612 gagttgtcttttt-tagttctaattatatccttaaacaaatttgtttataaaaatgttattttgtttgtgtcatt 20437685  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 10427224 - 10427296
Alignment:
Q  81 ataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaatttcatcataaa 153  Q
    |||||||||||||||  ||||| | | |||||||||||||| ||| |||||||||| ||||||| ||||||||    
T  10427224 ataaagaaagtagaccattttgggctttctttttctccttccaatcacacccttaagcaaatttgatcataaa 10427296  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 10427308 - 10427376
Alignment:
Q  109 ctttttctccttctaattacacccttaaacaaatttcatcataaaaatattattttgttcgtgtcattt 177  Q
    ||||||||||||| ||||| | ||||||  |||||| ||||||| |||  ||||||||| |||||||||    
T  10427308 ctttttctccttccaattataaccttaaggaaatttgatcataagaatgctattttgttggtgtcattt 10427376  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 39199162 - 39199233
Alignment:
Q  73 tactatgtataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaattt 144  Q
    |||||| |||||||||| || ||| ||||||| ||  ||||||||||| |||||| ||||||||||||||||    
T  39199162 tactatatataaagaaattacactattttgagctggttttttctccttttaattatacccttaaacaaattt 39199233  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 45521449 - 45521495
Alignment:
Q  238 ttttgggttgactttttctccttctaattacatccttaaacaaattt 284  Q
    |||||||||||||||||||||||| ||||| |  |||||||||||||    
T  45521449 ttttgggttgactttttctccttccaattatacacttaaacaaattt 45521495  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 45521431 - 45521495
Alignment:
Q  80 tataaagaaagtagactcttttgagttgtctttttctccttctaattacacccttaaacaaattt 144  Q
    |||||||||| ||| |  ||||| |||| ||||||||||||| ||||| || |||||||||||||    
T  45521431 tataaagaaaataggccgttttgggttgactttttctccttccaattatacacttaaacaaattt 45521495  T

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