View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_2 (Length: 547)
Name: NF1696_low_2
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 20 - 545
Target Start/End: Complemental strand, 34788354 - 34787829
Alignment:
| Q |
20 |
ctgtttctcaaatgctacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcc |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34788354 |
ctgtttctcaaatgctgcaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctacc |
34788255 |
T |
|
| Q |
120 |
tccttacacctttcctcaaactccgcaaacgccacaaaaagcagctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788254 |
tccttacacctttcctcaaactccgcaaacgccacaaaaagcagctctgcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgcct |
34788155 |
T |
|
| Q |
220 |
taggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788154 |
taggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacg |
34788055 |
T |
|
| Q |
320 |
ttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgccccc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788054 |
ttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgccccc |
34787955 |
T |
|
| Q |
420 |
gcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34787954 |
gcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaagagtaaccgcgcgatcccaaacattccgagcat |
34787855 |
T |
|
| Q |
520 |
gattaataaacttattcttcaactca |
545 |
Q |
| |
|
||||||||||||||||||||| |||| |
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|
| T |
34787854 |
gattaataaacttattcttcatctca |
34787829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 545
Target Start/End: Original strand, 2292840 - 2293368
Alignment:
| Q |
20 |
ctgtttctcaaatgctacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcc |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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|
| T |
2292840 |
ctgtttctcaaatgccacaaacttccgatacaaatcctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcccgctcagcc |
2292939 |
T |
|
| Q |
120 |
tccttacacctttcctcaaactccgcaaacgccacaaaaagcagctctgcttcctcatcatccgctagct---ccaccgctctttcataaacaatcctcg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
2292940 |
tccttacacctttcctcaaactccgcaaaagccacaaaaagcagctcagcttcctcatcatccgcaagcttctccaccgctctttcataaacattcctcg |
2293039 |
T |
|
| Q |
217 |
ccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
2293040 |
ccttaggaacctcgccattcttcatctcaaacttcgcataacgtatccaagcaccaaccctaggatgacacaatacaaatctctcgaaaatccctctagc |
2293139 |
T |
|
| Q |
317 |
acgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcc |
416 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | |||||| |
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|
| T |
2293140 |
tcgttcaatctcattatatctcagctcaaattttatataagatagccatccttgctgatccggcatccatttcatccatctctcaaaaacctgtctcgcc |
2293239 |
T |
|
| Q |
417 |
cccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
2293240 |
cccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatccactcgtggcaaaagagtaacagcgcgatcccaaacattcctcg |
2293339 |
T |
|
| Q |
517 |
catgattaataaacttattcttcaactca |
545 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |
|
|
| T |
2293340 |
catggttaataaacttattcttcatctca |
2293368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 188 - 523
Target Start/End: Original strand, 33635664 - 33635999
Alignment:
| Q |
188 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacac |
287 |
Q |
| |
|
|||||| ||||||||||||||| | || ||| ||||||| || ||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |
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|
| T |
33635664 |
ctccacagctctttcataaacacttcttgccctaggaacttcaccattcttcatctcaaatttcgcataacgtaaccaagcaccaacactaggatgacat |
33635763 |
T |
|
| Q |
288 |
aaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccact |
387 |
Q |
| |
|
|||||| ||||||||| ||||| ||||| || ||||| || | || ||| ||||||| ||||| | |||| | |||||||| |||||||| | |
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|
| T |
33635764 |
gtaacaaaaagctcgaaaattcctctaagtcgttcgatttcattgtactttagttcatattttatgtaagagagccatgcatgctgatcaggcatccatt |
33635863 |
T |
|
| Q |
388 |
tcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaag |
487 |
Q |
| |
|
|||||| |||||||||||| || | || || ||||||||||| |||| ||||||||| || |||| ||||||||| |||| |||||||| ||||| |
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|
| T |
33635864 |
ccatccacctctcgaaaacctctctaactccggcgacattgccaagaatcttctccatatgtatgtactcataccacaattgatggacccgcggtaaaag |
33635963 |
T |
|
| Q |
488 |
agtaaccgcgcgttcccaaacattccgagcatgatt |
523 |
Q |
| |
|
| |||| ||||| || ||||||||| |||||||| |
|
|
| T |
33635964 |
aataacagcgcgatcgtaaacattccttgcatgatt |
33635999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 2597991 - 2598110
Alignment:
| Q |
20 |
ctgtttctcaaatgctacaaacttccgatacaaaacctcagccctccccttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcc |
119 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||| ||||| || |||||||||||||||| |||||| | ||||| |
|
|
| T |
2597991 |
ctgtttctcaaatgccacaaatttcccatacaaatcctcagccctccccttcggaatataatcaattggaaatttataaatacacatcgcacactctgcc |
2598090 |
T |
|
| Q |
120 |
tccttacacctttcctcaaa |
139 |
Q |
| |
|
|| |||||||||||| |||| |
|
|
| T |
2598091 |
tcattacacctttccacaaa |
2598110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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