View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_20 (Length: 316)
Name: NF1696_low_20
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_20 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 49691108 - 49690810
Alignment:
| Q |
18 |
aaagagtggttggactcgtcatcaaatattgaatcaccgaagtaaaaatcatagggatgacaagaactatttatgaagaaattacttggagggcgaatgc |
117 |
Q |
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| T |
49691108 |
aaagagtggttggactcatcatcaaatattgaatcgccaaagtaaaaatcatagggatgacaagaactatttatgaagaaattacttggagggtgaatgc |
49691009 |
T |
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| Q |
118 |
ctaactttcgggtatggttgcatttgaaagctgttatatagtttttcatnnnnnnngttccaaaaggagtgggaggagggagggtaatattaacatagct |
217 |
Q |
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| T |
49691008 |
ctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcataaaaaaagttccaaaaggagtgggaggagggagggtaatattaacatagct |
49690909 |
T |
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| Q |
218 |
gaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagggttgccaatggaccagtgattatcaatctttttaac |
316 |
Q |
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| T |
49690908 |
gaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagtgttgccaatggaccagtgattatcaatctttttaac |
49690810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 49679474 - 49679175
Alignment:
| Q |
18 |
aaagagtggttggactcgtcatcaaatattgaatcaccgaagtaaaaatcatagggatgacaagaactatttatgaagaaattacttggagggcgaatgc |
117 |
Q |
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| T |
49679474 |
aaagagtggttggactcatcatcaaatattgaatcgccaaagtaaaaatcatagggatgacaagaactatttctgaagaaattacttggaggttggatgc |
49679375 |
T |
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| Q |
118 |
ctaactttcgggtatggttgcatttgaaagctgttatatagtttttcat-nnnnnnngttccaaaaggagtgggaggagggagggtaatattaacatagc |
216 |
Q |
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| T |
49679374 |
ctaattttcgggtacggttgcatttgaaagctgttatgtagtttttcataaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggc |
49679275 |
T |
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| Q |
217 |
tgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagggttgccaatggaccagtgattatcaatctttttaac |
316 |
Q |
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| T |
49679274 |
tgaatgcctcacaagcattcttctccaaaagcttggtgatattggggtcaataatggaaatagtgttgccaatggacccgcgattatcaatgtttgtaac |
49679175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 49686842 - 49686576
Alignment:
| Q |
18 |
aaagagtggttggactcgtcatcaaatattg---aatcaccgaagtaaaaatcatagggatgacaagaactatttatgaagaaattacttggagggcgaa |
114 |
Q |
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| T |
49686842 |
aaagagtggttgggctcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgc |
49686743 |
T |
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| Q |
115 |
tgcctaactttcgggtatggttgcatttgaaagctgttatatagtttttcatnnnnnnngttccaaaaggagtgggaggagggagggtaatattaacata |
214 |
Q |
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| T |
49686742 |
tggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatat---cata |
49686646 |
T |
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| Q |
215 |
gctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagggttg |
284 |
Q |
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| T |
49686645 |
gctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttg |
49686576 |
T |
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