View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_22 (Length: 309)
Name: NF1696_low_22
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 41980958 - 41981245
Alignment:
| Q |
6 |
agaagcaaagatcagcggcggagggagtgtgaagaaaagcgaaaagatcagcataagcgccgtcgcgtgctgtggattcaggccagggagaacgccagtt |
105 |
Q |
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| T |
41980958 |
agaagcaaagatcagcggcggagggagtgtgaagaaaagcgaaaagatcagcataagcgccgtcgcgtgctgtggattcaggccagggagaacgccagtt |
41981057 |
T |
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| Q |
106 |
gaaaatgatggtggaggagagtgcgacatcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcgggcg |
205 |
Q |
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| T |
41981058 |
gaaaatgatggtggaggagagtgcgacgtcgaaggaaggaggacgagactttgcgtcgtagttgtcgtagacggtgaaggtgcggaggaggtagcgggcg |
41981157 |
T |
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| Q |
206 |
gagggaagtgaagggaaggagtagcagnnnnnnnngccggaggaggaggaagggaagaagcggagggttttttctgaggggaggttga |
293 |
Q |
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| T |
41981158 |
gagggaagtgaagggaaggagtagcagttttttttgccggaggaggaggaagggaagaagcggagggttttttctgaggggaggttga |
41981245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 22083769 - 22083702
Alignment:
| Q |
134 |
tcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcg |
201 |
Q |
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| T |
22083769 |
tcgaaggaaggaggatgcgacttgccgtcgtagttgtcgtagacgacgaaggtgcgaatgaggtagcg |
22083702 |
T |
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