View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_low_24 (Length: 303)

Name: NF1696_low_24
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_low_24
NF1696_low_24
[»] chr7 (9 HSPs)
chr7 (155-303)||(45703586-45703739)
chr7 (9-123)||(45703740-45703853)
chr7 (139-182)||(4860908-4860951)
chr7 (139-182)||(18411834-18411877)
chr7 (139-181)||(21644214-21644256)
chr7 (7-57)||(25407194-25407244)
chr7 (9-57)||(3323139-3323187)
chr7 (13-57)||(16883228-16883272)
chr7 (13-57)||(24263065-24263109)
[»] chr3 (10 HSPs)
chr3 (125-176)||(40771336-40771387)
chr3 (7-57)||(22624330-22624380)
chr3 (7-58)||(54190288-54190339)
chr3 (13-57)||(2673962-2674006)
chr3 (9-57)||(6305093-6305141)
chr3 (13-57)||(8515395-8515439)
chr3 (9-57)||(10097157-10097205)
chr3 (9-57)||(10204043-10204091)
chr3 (9-57)||(10611128-10611176)
chr3 (13-57)||(32478641-32478685)
[»] chr1 (3 HSPs)
chr1 (122-168)||(36295363-36295409)
chr1 (7-57)||(9523508-9523558)
chr1 (9-57)||(2397574-2397622)
[»] chr6 (4 HSPs)
chr6 (13-57)||(33332818-33332862)
chr6 (9-57)||(35204414-35204462)
chr6 (9-57)||(13880521-13880569)
chr6 (13-57)||(14739314-14739358)
[»] chr5 (6 HSPs)
chr5 (139-182)||(24557452-24557495)
chr5 (139-182)||(24598484-24598527)
chr5 (139-181)||(27448000-27448042)
chr5 (139-181)||(43595298-43595340)
chr5 (139-181)||(43628092-43628134)
chr5 (13-57)||(31398734-31398778)
[»] chr8 (5 HSPs)
chr8 (139-181)||(26299550-26299592)
chr8 (13-57)||(10686006-10686050)
chr8 (9-57)||(16755611-16755659)
chr8 (9-57)||(28329677-28329725)
chr8 (13-57)||(35743690-35743734)
[»] chr4 (1 HSPs)
chr4 (132-182)||(47745865-47745914)
[»] chr2 (6 HSPs)
chr2 (139-181)||(25394063-25394105)
chr2 (9-57)||(2737987-2738035)
chr2 (13-57)||(19347579-19347623)
chr2 (9-57)||(20053111-20053159)
chr2 (9-57)||(39684030-39684078)
chr2 (9-57)||(45569172-45569220)
[»] scaffold0078 (1 HSPs)
scaffold0078 (139-180)||(35188-35229)
[»] scaffold0197 (1 HSPs)
scaffold0197 (13-57)||(16051-16095)
[»] scaffold0023 (1 HSPs)
scaffold0023 (9-57)||(49557-49605)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 155 - 303
Target Start/End: Complemental strand, 45703739 - 45703586
Alignment:
Q  155 tgacacctttaaaaagtttaaggaatgatgtattcttatagagaatcactcataaactaaattgaaagtattaagaactaacaacgacctcaag-----t 249  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     |    
T  45703739 tgacacctttaaaaagtttaaggaatgatatattcttatagagaatcactcagaaactaaattgaaagtattaagaactaacaacgacctcaagtttaat 45703640  T
Q  250 ttgttttaggatcttttaatgagttttgtggtaacaaaggtatttacccacttg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703639 ttgttttaggatcttttaatgagttttgtggtaacaaaggtatttacccacttg 45703586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 45703853 - 45703740
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtctgacaatagcaacatatcttgacaatagtttctatttgctcattatgattg 108  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703853 cataattctagtagaccttttgaatatgttcgttcaaa-ctttggggtctgacaatagcaacatatcttgacaatagtttctatttgctcattatgattg 45703755  T
Q  109 atgatttcttagaaa 123  Q
    |||||||||||||||    
T  45703754 atgatttcttagaaa 45703740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 4860951 - 4860908
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 182  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  4860951 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatga 4860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 18411877 - 18411834
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 182  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  18411877 ttttgaaaaaaaaaagtgacacattttaaaagtttaaggaatga 18411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 21644256 - 21644214
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 181  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  21644256 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 21644214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 25407194 - 25407244
Alignment:
Q  7 tacataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  25407194 tacataaatctagtaggccttttgagtatgttcattcggatctttggggtc 25407244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 3323187 - 3323139
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  3323187 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 3323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 16883272 - 16883228
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16883272 attctagtagaccttttgagtatgtgcattcggatctttggggtc 16883228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 24263065 - 24263109
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  24263065 attctagtagaccttttgagtatgtgcattcggatctttggggtc 24263109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 40771387 - 40771336
Alignment:
Q  125 agtatgagttcatattttgaaaaataaaagtgacacctttaaaaagtttaag 176  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  40771387 agtatgagttcatattttgaaacataaaagtgacacatttgaaaagtttaag 40771336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 22624380 - 22624330
Alignment:
Q  7 tacataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  22624380 tacataaatctagtaggccttttgagtatgttcattcagatctttggggtc 22624330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 54190288 - 54190339
Alignment:
Q  7 tacataattctagtagaccttttgagtatgttcgttcaaatctttggggtct 58  Q
    ||||||| |||||||| |||||||||||||||| |||  |||||||||||||    
T  54190288 tacataaatctagtaggccttttgagtatgttcattcggatctttggggtct 54190339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 2673962 - 2674006
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  2673962 attctagtagaccttttgagtatgtgcattcggatctttggggtc 2674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 6305093 - 6305141
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  6305093 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 6305141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 8515439 - 8515395
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  8515439 attctagtagaccttttgagtatgtgcattcggatctttggggtc 8515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 10097205 - 10097157
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  10097205 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 10097157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 10204091 - 10204043
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  10204091 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 10204043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 10611176 - 10611128
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  10611176 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 10611128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 32478685 - 32478641
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  32478685 attctagtagaccttttgagtatgtgcattcggatctttggggtc 32478641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 36295363 - 36295409
Alignment:
Q  122 aagagtatgagttcatattttgaaaaataaaagtgacacctttaaaa 168  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  36295363 aagagtatgagttcacattttaaaacataaaagtgacacctttaaaa 36295409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 9523508 - 9523558
Alignment:
Q  7 tacataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  9523508 tacataaatctagtaggccttttgagtatgttcattcggatctttggggtc 9523558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 2397622 - 2397574
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  2397622 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 2397574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 33332818 - 33332862
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||    
T  33332818 attctagtagaccttttgagtatgtgcattcagatctttggggtc 33332862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 35204462 - 35204414
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  35204462 cataaatctagtagaccttttgagtatgttcattcggatctttggggtc 35204414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 13880521 - 13880569
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  13880521 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 13880569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 14739314 - 14739358
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    |||||||||| |||||||||||||| | |||| ||||||||||||    
T  14739314 attctagtaggccttttgagtatgtgcattcagatctttggggtc 14739358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 24557452 - 24557495
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 182  Q
    |||||||||| ||||||||||||||| | |||||||||||||||    
T  24557452 ttttgaaaaacaaaagtgacacctttgagaagtttaaggaatga 24557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 24598484 - 24598527
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 182  Q
    |||||||||| ||||||||||||||| | |||||||||||||||    
T  24598484 ttttgaaaaacaaaagtgacacctttgagaagtttaaggaatga 24598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 27448042 - 27448000
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 181  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  27448042 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 27448000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 43595340 - 43595298
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 181  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  43595340 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 43595298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 43628134 - 43628092
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 181  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  43628134 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 43628092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 31398734 - 31398778
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  31398734 attctagtagaccttttgagtatgtgcattcggatctttggggtc 31398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 26299592 - 26299550
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 181  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  26299592 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 26299550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 10686006 - 10686050
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  10686006 attctagtagaccttttgagtatgtgcattcggatctttggggtc 10686050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 16755659 - 16755611
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  16755659 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 16755611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 28329677 - 28329725
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  28329677 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 28329725  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 35743734 - 35743690
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  35743734 attctagtagaccttttgagtatgtgcattcggatctttggggtc 35743690  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 47745865 - 47745914
Alignment:
Q  132 gttcatattttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 182  Q
    ||||| ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  47745865 gttcacattttgaaaaataaa-gtgacacatttgaaaagtttaaggaatga 47745914  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 25394105 - 25394063
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 181  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  25394105 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 25394063  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 2737987 - 2738035
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  2737987 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 2738035  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 19347623 - 19347579
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  19347623 attctagtagaccttttgagtatgtgcattcggatctttggggtc 19347579  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 20053159 - 20053111
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  20053159 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 20053111  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 39684030 - 39684078
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  39684030 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 39684078  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 45569172 - 45569220
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  45569172 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 45569220  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 35229 - 35188
Alignment:
Q  139 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaat 180  Q
    |||| ||||| ||||||||||||||||| |||||||||||||    
T  35229 ttttaaaaaacaaaagtgacacctttaataagtttaaggaat 35188  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 16051 - 16095
Alignment:
Q  13 attctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16051 attctagtagaccttttgagtatgtgcattcggatctttggggtc 16095  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 49605 - 49557
Alignment:
Q  9 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 57  Q
    ||||| |||||||| |||||||||||||||| |||  ||||||||||||    
T  49605 cataaatctagtaggccttttgagtatgttcattcggatctttggggtc 49557  T

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