View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_25 (Length: 301)
Name: NF1696_low_25
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 31850538 - 31850811
Alignment:
| Q |
9 |
agattatactaaatatatatgaatggagaatttcataaattaaaaagaaagaaacgatgtctagtaatcaaaattcttttgtaaataatagtatgattca |
108 |
Q |
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| T |
31850538 |
agattatactaaatatatatgaaaggagaatttcataaatttaaaagaaagaaacgatgtctagtaatcaaaattcttttgtaa----tagtatgattca |
31850633 |
T |
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| Q |
109 |
tgtaactttttatttgcttcatatgtaatacctctttttagcaacatcattaagtaatgagtagttagttgcgtgagtagttagttacactcttgcttat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31850634 |
tgtaactttttatttgcttcatatgtaatacctctttttagcaacatcattaagtaatgagtagttagttgcgtgagtagttagttacactcttgcttat |
31850733 |
T |
|
| Q |
209 |
agatgaatatataataatgagtaatgagtctcttcgtccatttttcttgataaaatgatatagttttatgtgattatt |
286 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31850734 |
agatgaatatatactaatgagtaatgagtctctttgtccatttttcttgataaaatgatatagttttatgtgattatt |
31850811 |
T |
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