View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1696_low_26 (Length: 294)
Name: NF1696_low_26
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_26 |
 | |
|
| [»] scaffold0489 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0489 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 11076 - 10800
Alignment:
| Q |
7 |
ctatctatatatataatccataaagtagattcatatatcgactcttcactcagatcagatcaattcatatttggttcttcttagagaaaatagattatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11076 |
ctatctatatatataatccataaagtagattcatatatcgactctttattcagatcagatcaattcatatt-ggttcttcttagagaaaatagattatca |
10978 |
T |
|
| Q |
107 |
tcatcatatattaatgatgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10977 |
tcatcatatattaatgatgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttac |
10878 |
T |
|
| Q |
207 |
attcaacaacatggacctgggaattggagatctgttccaaccaatactggtataatataattgctctattttcttcat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877 |
attcaacaacatggacctgggaattggagatctgttccaaccaatactggtataatataattgctctattttcttcat |
10800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 9952 - 10228
Alignment:
| Q |
7 |
ctatctatatatataatccataaagtagattcatatatcgactcttcactcagatcagatcaattcatatttggttcttcttagagaaaatagattatca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9952 |
ctatctatatatataatccataaagtagattcatatatcgactctttattcagatcagatcaattcatatt-ggttcttcttagagaaaatagattatca |
10050 |
T |
|
| Q |
107 |
tcatcatatattaatgatgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10051 |
tcatcatatattaatgatgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttac |
10150 |
T |
|
| Q |
207 |
attcaacaacatggacctgggaattggagatctgttccaaccaatactggtataatataattgctctattttcttcat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10151 |
attcaacaacatggacctgggaattggagatctgttccaaccaatactggtataatataattgctctattttcttcat |
10228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 3615822 - 3615948
Alignment:
| Q |
132 |
ccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttacattcaacaacatggacctgggaatt |
231 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||| ||||| |||| |
|
|
| T |
3615822 |
ccaccatgttgtgataaagaaggtgtgaaaaaaggaccttggactcctgaagaagatatcattttggtttcttatattcaagaacatggtcctggaaatt |
3615921 |
T |
|
| Q |
232 |
ggagatctgttccaaccaatactggta |
258 |
Q |
| |
|
||| | ||||||| ||||||||||||| |
|
|
| T |
3615922 |
ggaaagctgttcctaccaatactggta |
3615948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 2460471 - 2460598
Alignment:
| Q |
123 |
atgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttacattcaacaacatggac |
222 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| | ||| |||| || ||| ||||||| | |
|
|
| T |
2460471 |
atgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttatatacaagaacatggtc |
2460570 |
T |
|
| Q |
223 |
ctgggaattggagatctgttccaaccaa |
250 |
Q |
| |
|
|||| |||||||| ||||||||||||| |
|
|
| T |
2460571 |
ctggaaattggagggctgttccaaccaa |
2460598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 33929283 - 33929146
Alignment:
| Q |
123 |
atgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttacattcaacaacatggac |
222 |
Q |
| |
|
|||||||| || || |||||||| ||| | || || || ||||| || ||||| |||||||||||||||||| | ||||||||||| ||| ||||||| | |
|
|
| T |
33929283 |
atgggaagacctccttgttgtgaaaaagttggcatcaagaaaggtccatggacacctgaagaagatatcatccttgtttcttacatccaagaacatggtc |
33929184 |
T |
|
| Q |
223 |
ctgggaattggagatctgttccaaccaatactggtata |
260 |
Q |
| |
|
| || ||||||||| | ||||| || ||||| |||||| |
|
|
| T |
33929183 |
caggaaattggagaacagttcctactaatacaggtata |
33929146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 13994589 - 13994458
Alignment:
| Q |
118 |
taatgatgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttacattcaacaaca |
217 |
Q |
| |
|
||||||||| || ||||| || ||||||||| | ||| |||| ||||||||||||||||| || || ||||| || || || || ||||||||| |||| |
|
|
| T |
13994589 |
taatgatggtgagaccaccttgctgtgagaaaattggggttaagaaaggaccttggactccagaggaggatataattttggtatcatacattcaagaaca |
13994490 |
T |
|
| Q |
218 |
tggacctgggaattggagatctgttccaacca |
249 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||| |
|
|
| T |
13994489 |
tggacctggaaattggagatcagttcccacca |
13994458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University