View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_30 (Length: 273)
Name: NF1696_low_30
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 32076977 - 32077223
Alignment:
| Q |
16 |
aatacaacaaagtatcataaacaatgatagagggagggtgatcaagtaggtcaagtagctcctcaaatggtgcttccatctttgtcatgacatcttccat |
115 |
Q |
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| T |
32076977 |
aatacaacaaagtatcataaacaatgatagagggagggtgatcaagtaggtcaagtagctcctcaaagggtgcttccatctttgtcatgacatcttccat |
32077076 |
T |
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| Q |
116 |
gaatgcaggatggtcgcggccgcggataagttcggagggaataacgttcgggatcgaacgaaagcttatgttgtcgggttttggctcggaggagatgaag |
215 |
Q |
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| T |
32077077 |
gaatgcaggatggtcgcggccacagataagttccgagggaataacgttcgatcccgaacgaaagcttatgttgtcaggttttggctcggaggagatgaag |
32077176 |
T |
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| Q |
216 |
cttagccattcttcagtgactacaaaggaaacatgaatgttgatatt |
262 |
Q |
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| T |
32077177 |
cttagccattcttcagtgactacaaaggaaacatgaatgttgctatt |
32077223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 31004634 - 31004508
Alignment:
| Q |
109 |
cttccatgaatgcaggatggtcgcggccgcggataagttcggagggaataacgttcgggatcgaacgaaagcttatgttgtcgggttttggctcggagga |
208 |
Q |
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| T |
31004634 |
cttccatgaagtcagcgtggtcgcgaccacgaatgagttcggatggaacaacgttggggatcgaacggaagctgatgttgtcgggttttggttcggagga |
31004535 |
T |
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| Q |
209 |
gatgaagcttagccattcttcagtgac |
235 |
Q |
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| T |
31004534 |
gatgaaggttaaccattcttcggtgac |
31004508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 30987837 - 30987791
Alignment:
| Q |
66 |
tcaagtagctcctcaaatggtgcttccatctttgtcatgacatcttc |
112 |
Q |
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| T |
30987837 |
tcaagaagcttctcaaacggtgcttccatctttgtcatgacagcttc |
30987791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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