View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_35 (Length: 260)
Name: NF1696_low_35
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 47902896 - 47902668
Alignment:
| Q |
16 |
atcaaaaagaataaccaaaataaaaagatggtgaaagattgtacagnnnnnnntggtgcaagaagtgccctactcctatactaacttggtttgtaacaag |
115 |
Q |
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| T |
47902896 |
atcaataagaataaccaaaataaaaagatggtgaaagattgtacaaaaaaaaatggtgaaagaagtgccctactcctatactaacttggtttgtaacaag |
47902797 |
T |
|
| Q |
116 |
aaacctagctgtttcttagattgatattcttcacaaaaatagataatatataaccnnnnnnngagaagacgtcttctacgataataatttacagtgcaga |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
47902796 |
aaacctggctgtttcttagattgatattcttcacaaaaatagataatatataaccaaaaaaagagaagacgtcttctacgaaaataatttacagtgcaga |
47902697 |
T |
|
| Q |
216 |
ttgtttgtcccatcaataatcaattcatt |
244 |
Q |
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||||||||||||||||||||||| ||||| |
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| T |
47902696 |
ttgtttgtcccatcaataatcaaatcatt |
47902668 |
T |
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