View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_38 (Length: 251)
Name: NF1696_low_38
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 34462472 - 34462259
Alignment:
| Q |
31 |
acacaccagctcttcaatatatattctttagttcatgatctattttttaaaaaattagtttacacgctcgattcatagattgaccactcatgtttatata |
130 |
Q |
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| T |
34462472 |
acacaccagctcttcaatatatattctttagttcatgatctaattttttaaaaattagtttacacgctcgattcatagattgatcactcatgtttatata |
34462373 |
T |
|
| Q |
131 |
annnnnnngttaataataaatgttagtacgttaaatgttatgttattannnnnnncattgtccgtacttgaaccttgaactttgactcctcaactccttt |
230 |
Q |
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| T |
34462372 |
atttttttgttaataacaaatgttagtacgttaaatgttatgttattatttttttcattgtccgtacttgaaccttgaactttgactcctcaactccttt |
34462273 |
T |
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| Q |
231 |
aatcacctatgctt |
244 |
Q |
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|||||||||||||| |
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| T |
34462272 |
aatcacctatgctt |
34462259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 8098188 - 8098224
Alignment:
| Q |
142 |
aataataaatgttagtacgttaaatgttatgttatta |
178 |
Q |
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| T |
8098188 |
aataataaatgttagtatgttaattgttatgttatta |
8098224 |
T |
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