View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_39 (Length: 249)
Name: NF1696_low_39
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 49170812 - 49170570
Alignment:
| Q |
1 |
caaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtt |
100 |
Q |
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| T |
49170812 |
caaccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtt |
49170713 |
T |
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| Q |
101 |
tcttatgtttgtggattgattttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcagttatcagaggacaaaataaa |
200 |
Q |
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| T |
49170712 |
tcttatgtttgtggattgtttttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcagttatcagaggacaaaataaa |
49170613 |
T |
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| Q |
201 |
ctggaaatacccaaattttgttcctgaatgcatttcatctcac |
243 |
Q |
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| T |
49170612 |
ctggaaatacccaaattttgttcctgaatgcatttcatctcac |
49170570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 49179317 - 49179556
Alignment:
| Q |
4 |
ccttcaattaagcatgttttactttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtttct |
103 |
Q |
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| T |
49179317 |
ccttcaattatgcatgtataactttcatcactgggatcatgtaatggaagtgcttcagcattgccctaatattcaagttctcagaattaataaggtttct |
49179416 |
T |
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| Q |
104 |
tatgtttgtggattgattttgttccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcagttatcagaggacaaaataaactg |
203 |
Q |
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| T |
49179417 |
tatgtttgtggattgtttttgttccttctttacttcgactgtatttcacaaatcttatttttgtatatgttttgcagctgtcacccgacaatattaattg |
49179516 |
T |
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| Q |
204 |
gaaatacccaaattttgttcctgaatgcatttcatctcac |
243 |
Q |
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| T |
49179517 |
gaaatacccaaattttgttcctgaatgcatttcgtctcac |
49179556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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