View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1696_low_4 (Length: 522)
Name: NF1696_low_4
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 9086450 - 9085950
Alignment:
| Q |
11 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086450 |
attctcaacaatacacagggagaaggtaaagagttcatcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
9086351 |
T |
|
| Q |
111 |
gcgcagag----ggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttca |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
9086350 |
gcgcagagctagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatattttcacctgataacacggatcacttca |
9086251 |
T |
|
| Q |
207 |
tggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaa |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086250 |
tggggtgggagaagctgca-caaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaa |
9086152 |
T |
|
| Q |
307 |
acctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgaca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086151 |
ccctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgaca |
9086052 |
T |
|
| Q |
407 |
gctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttgt |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086051 |
gctgctaggggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatatttatagttatgggatgttgt |
9085952 |
T |
|
| Q |
507 |
tg |
508 |
Q |
| |
|
|| |
|
|
| T |
9085951 |
tg |
9085950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 9125619 - 9125122
Alignment:
| Q |
11 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| | ||| ||||| || ||||||||||| |||||||| | | |
|
|
| T |
9125619 |
attctcaacaatacacagggagaagggatagagtttatcacagaagtggaaattatgggtacaatccaccacattaacgtggttcgcttgcttggctact |
9125520 |
T |
|
| Q |
111 |
gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg |
210 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |||||||||| |||||||| |
|
|
| T |
9125519 |
gcgcagatggaatccatcgagctcttgtatacaatttgtttccaaaaggttcgctacaatgcttcatatttccaccggatgacaaggatcatttcatggg |
9125420 |
T |
|
| Q |
211 |
gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct |
310 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||| |
|
|
| T |
9125419 |
gtgggagaagctacaactaattagtcttggtgtagcaaaaggaattgagtatcttcatgagggttgtagccatccaattcttcactttgacatcaaccct |
9125320 |
T |
|
| Q |
311 |
cacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctg |
410 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||| || | |
|
|
| T |
9125319 |
cacaatgttttgctagatgacaccttcactccaaaaatttcagactttggactcgccaaattatgttcaaagaatgttagtgttgtatccatgactgcgg |
9125220 |
T |
|
| Q |
411 |
ctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttgttg |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9125219 |
ctagaggaaccttgggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatatttatagttatgggatgttgttg |
9125122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 9070151 - 9069654
Alignment:
| Q |
11 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| |
|
|
| T |
9070151 |
attctcaacaatacacaaggagaagggaaagagttcatcactgaagtggaaattatgggcaaaattcaccatatcaatgtggttcgtttgcttggctttt |
9070052 |
T |
|
| Q |
111 |
gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg |
210 |
Q |
| |
|
||||||| ||| | || | ||||| ||||||||||| ||| | |||||||| || ||||||||||||||||| || |||||||||||| | |||||||| |
|
|
| T |
9070051 |
gcgcagaaggagttcactgcgctctagtatacaattttttttcgaaaggttctctgcaaagcttcatatttccaccggataacaaggattatttcatggg |
9069952 |
T |
|
| Q |
211 |
gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct |
310 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||| || ||| |
|
|
| T |
9069951 |
gtgggagaagctacaacaaattagtactggtatagcaaaagcaatcgagtatcttcatgagggctgtagccatccaattattcactttgacatcaaccct |
9069852 |
T |
|
| Q |
311 |
cacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctg |
410 |
Q |
| |
|
| |||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
9069851 |
cgcaatgttttgttagatgattccttcactccaaaaatttctgactttgggctcgccaaattatgtgccaagaatcttagtatagtgtccatgacagctg |
9069752 |
T |
|
| Q |
411 |
ctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttgttg |
508 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
9069751 |
ctaggggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatatatacagttatggaatgttgttg |
9069654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 508
Target Start/End: Complemental strand, 8862030 - 8861544
Alignment:
| Q |
22 |
tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagaggga |
121 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||| | ||||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| ||| |
|
|
| T |
8862030 |
tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga |
8861931 |
T |
|
| Q |
122 |
atccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagc |
221 |
Q |
| |
|
|| || || |||||||| |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||||||||||||||||| |
|
|
| T |
8861930 |
attcaccgcgctcttgtctacaatttatttccaaatggttcgctacaaagcttcatatttccaccagataacaaggaccatttcatggggtgggagaagc |
8861831 |
T |
|
| Q |
222 |
tgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgtttt |
321 |
Q |
| |
|
| ||||||||| || | || || || |||||||| |||||||| ||| ||||||| ||||||||| | ||||| ||||| || |||||||||||||| |
|
|
| T |
8861830 |
tacaacaaattggtataggaattgccaaaggaattgagtatctacatctcggttgtaaccatccaataattcacttcgacatcaaccctcacaatgtttt |
8861731 |
T |
|
| Q |
322 |
gctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctagaggaacc |
421 |
Q |
| |
|
|||||||||| |||| || ||||||||||| || ||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||| |||||| |
|
|
| T |
8861730 |
gctagatgaatcctttacgccaaaaatttcggattttggtctcgccaaattatgttccaagaatcttagcgttgtgtccatgacagctgctaagggaacc |
8861631 |
T |
|
| Q |
422 |
ttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttgttg |
508 |
Q |
| |
|
|||||||| ||||||||||||||| | ||| |||||||||| ||||| ||||||||||| |||||||| ||||| || ||||||||| |
|
|
| T |
8861630 |
ttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaatgttgttg |
8861544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 8979441 - 8978944
Alignment:
| Q |
11 |
attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt |
110 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| | | ||||| | ||||||||||||||| ||||| ||||| || ||||| |||||||| || | |
|
|
| T |
8979441 |
attctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttct |
8979342 |
T |
|
| Q |
111 |
gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg |
210 |
Q |
| |
|
| ||||||||||| ||||||| |||||| |||||||| ||| |||| ||||| ||||||| ||||||||||| || |||||| |||| ||||||||||| |
|
|
| T |
8979341 |
gtgcagagggaattcatcgtgttcttgtctacaatttattttcaaagggttcgttacaaagtttcatatttcctccagataacgaggaccacttcatggg |
8979242 |
T |
|
| Q |
211 |
gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct |
310 |
Q |
| |
|
|||||||| |||||| ||||| || |||| || || | |||||| |||||||||||| |||||||||| ||| ||||||| || |||||||| || ||| |
|
|
| T |
8979241 |
gtgggagatgctgcagaaaattggtattggcatagccagaggaattgagtatcttcatcagggttgtagtcattcaatccttcattttgacatcaaccct |
8979142 |
T |
|
| Q |
311 |
cacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctg |
410 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
8979141 |
cacaatgttttgctcgatgacacattaactccaaaaatttcagattttggtctcgccaaattatgttccatgaattgtagtgtagtgtccatgacagcgg |
8979042 |
T |
|
| Q |
411 |
ctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttgttg |
508 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||| ||||| |||||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
8979041 |
ctaggggtaccttgggatatatggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatttatagctatggaatgttgttg |
8978944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 247 - 470
Target Start/End: Complemental strand, 9106469 - 9106248
Alignment:
| Q |
247 |
aaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaa |
346 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| ||||||||| || ||||||||||| || |||||||||||||||| |||||| | ||||| |||||| |
|
|
| T |
9106469 |
aaaaggaattgagtatcttcacgaagattgtatccatccaattcttcactttgacatcaaccctcacaatgttttgcaagatgacaaattcacgccaaaa |
9106370 |
T |
|
| Q |
347 |
atttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttt |
446 |
Q |
| |
|
||||||| ||||| | |||||||| ||||| || || | || | |||||||| || | |||||||| ||||||||||||||||||||| |||| | |
|
|
| T |
9106369 |
gtttcagattttggttttgccaaattttgttctaataaccattgtttggtgtccattaccgatgctagagaaaccttgggatatatggcgccagaag--t |
9106272 |
T |
|
| Q |
447 |
tgtcacgaaattttggaaatgttt |
470 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
9106271 |
tgtcacaaaattttggaaatgttt |
9106248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 508
Target Start/End: Complemental strand, 9236265 - 9236151
Alignment:
| Q |
394 |
agtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagt |
493 |
Q |
| |
|
|||||| ||||| || || ||||||||||||||||| || || ||||||||||| || |||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
9236265 |
agtgtctatgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatatttatagc |
9236166 |
T |
|
| Q |
494 |
tatgggatgttgttg |
508 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
9236165 |
tacggtatgttgttg |
9236151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 504
Target Start/End: Original strand, 9337687 - 9337898
Alignment:
| Q |
293 |
cactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtg |
392 |
Q |
| |
|
||||||||||| || ||||| ||||| ||| ||||||| | |||||||| |||||| |||| ||||| | ||||| ||||||| || ||| |||| |
|
|
| T |
9337687 |
cactttgacatcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagtg |
9337786 |
T |
|
| Q |
393 |
tagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatag |
492 |
Q |
| |
|
| || |||||||| || |||| ||||| || || || ||||| ||||||||||| ||| |||| ||||| ||||| ||| |||||||||||| || || |
|
|
| T |
9337787 |
tcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacag |
9337886 |
T |
|
| Q |
493 |
ttatgggatgtt |
504 |
Q |
| |
|
||| || ||||| |
|
|
| T |
9337887 |
ttacggtatgtt |
9337898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 504
Target Start/End: Original strand, 9364546 - 9364757
Alignment:
| Q |
293 |
cactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtg |
392 |
Q |
| |
|
||||||||||| || ||||| ||||| ||| ||||||| | |||||||| |||||| |||| ||||| | ||||| ||||||| || ||| ||| |
|
|
| T |
9364546 |
cactttgacatcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagta |
9364645 |
T |
|
| Q |
393 |
tagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatag |
492 |
Q |
| |
|
| || |||||||| || |||| ||||| || || || ||||| ||||||||||| ||| |||| ||||| ||||| ||| |||||||||||| || || |
|
|
| T |
9364646 |
tcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacag |
9364745 |
T |
|
| Q |
493 |
ttatgggatgtt |
504 |
Q |
| |
|
||| || ||||| |
|
|
| T |
9364746 |
ttacggtatgtt |
9364757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 492
Target Start/End: Original strand, 9377984 - 9378066
Alignment:
| Q |
410 |
gctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatag |
492 |
Q |
| |
|
||||||||||| ||||| || || || ||||||||||| ||| |||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
9377984 |
gctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatag |
9378066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 267
Target Start/End: Complemental strand, 9420873 - 9420670
Alignment:
| Q |
64 |
tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca |
163 |
Q |
| |
|
|||||||||||| || || ||||| || ||||| ||| ||||||||||||| || ||| | | ||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
9420873 |
tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg |
9420774 |
T |
|
| Q |
164 |
ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc |
263 |
Q |
| |
|
|||| | ||||||| | |||||| | | ||| || || | || ||||||||||| ||||||||| |||||| || || ||||| || ||||||| |
|
|
| T |
9420773 |
ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc |
9420674 |
T |
|
| Q |
264 |
ttca |
267 |
Q |
| |
|
|||| |
|
|
| T |
9420673 |
ttca |
9420670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 267
Target Start/End: Complemental strand, 9437956 - 9437753
Alignment:
| Q |
64 |
tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca |
163 |
Q |
| |
|
|||||||||||| || || ||||| || ||||| ||| ||||||||||||| || ||| | | ||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
9437956 |
tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg |
9437857 |
T |
|
| Q |
164 |
ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc |
263 |
Q |
| |
|
|||| | ||||||| | |||||| | | ||| || || | || ||||||||||| ||||||||| |||||| || || ||||| || ||||||| |
|
|
| T |
9437856 |
ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc |
9437757 |
T |
|
| Q |
264 |
ttca |
267 |
Q |
| |
|
|||| |
|
|
| T |
9437756 |
ttca |
9437753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 508
Target Start/End: Original strand, 10930800 - 10930915
Alignment:
| Q |
393 |
tagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatag |
492 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||| || || || || |||||||| ||| | || ||||||||||| ||| || || ||| ||||||| |
|
|
| T |
10930800 |
tagtgtcaatgacagcagctagaggaactttgggctacattgctccagaagttttctcaaggaactttggaaatgtgtcttacaaatcagatgtttatag |
10930899 |
T |
|
| Q |
493 |
ttatgggatgttgttg |
508 |
Q |
| |
|
|||||| ||| ||||| |
|
|
| T |
10930900 |
ttatggaatgatgttg |
10930915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 508
Target Start/End: Original strand, 9300365 - 9300458
Alignment:
| Q |
415 |
aggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttgttg |
508 |
Q |
| |
|
|||||| || ||||| ||||| || |||||||| || |||| ||||| ||||| ||| |||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
9300365 |
aggaacattaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttg |
9300458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 505
Target Start/End: Original strand, 9171772 - 9171864
Alignment:
| Q |
413 |
agaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatatttatagttatgggatgttg |
505 |
Q |
| |
|
|||||||| || ||||| ||||| || |||||||| || |||||||||| ||||| ||| |||||||||||| ||||| ||||| |||||| |
|
|
| T |
9171772 |
agaggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtctcttataagtctgatatatatagctatggtatgttg |
9171864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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