View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_44 (Length: 238)
Name: NF1696_low_44
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 56098240 - 56098478
Alignment:
| Q |
1 |
ctgattcctctgttctcgagtaaagctacgtacagaaacacctgacacacgctccctctcccaacaacacctacctataaagtcttaggttagtc-ttaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56098240 |
ctgattcctctgttctcgagtaaagctacgtacagaaacacctgacacacgctccctctcccaacaacacctacctataaagtcttaggttagtccttaa |
56098339 |
T |
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| Q |
100 |
cccactctactctaattgggccccctcaccaccgacccatcctacttgtcatttcctctttcgttctctcttcaactataatctcacgtgtacacatacc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56098340 |
cccactctactctaattgggccccctcaccaccgacccatcctacttgtcatttcctctttcgttctctcttcaactataatctcacgtgtacacatacc |
56098439 |
T |
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| Q |
200 |
atttgctacacccttaactatcttatcactatgtttcat |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
56098440 |
atttgctacacccttaactatcttatcactatgtttcat |
56098478 |
T |
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