View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_low_47 (Length: 235)

Name: NF1696_low_47
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_low_47
NF1696_low_47
[»] chr2 (11 HSPs)
chr2 (17-178)||(690882-691043)
chr2 (189-235)||(10723964-10724010)
chr2 (189-229)||(15447704-15447744)
chr2 (189-234)||(690814-690859)
chr2 (198-235)||(9389493-9389530)
chr2 (197-234)||(12303605-12303642)
chr2 (197-234)||(12413519-12413556)
chr2 (197-234)||(12425579-12425616)
chr2 (197-234)||(17142856-17142893)
chr2 (189-234)||(24592836-24592881)
chr2 (198-234)||(43117189-43117225)
[»] chr4 (13 HSPs)
chr4 (190-234)||(13121570-13121614)
chr4 (189-234)||(38374983-38375028)
chr4 (189-234)||(43034332-43034377)
chr4 (189-229)||(10564455-10564495)
chr4 (197-235)||(6610288-6610326)
chr4 (189-234)||(2888900-2888945)
chr4 (198-235)||(17216128-17216165)
chr4 (189-234)||(20403158-20403203)
chr4 (197-234)||(22630358-22630395)
chr4 (197-234)||(37930845-37930882)
chr4 (197-234)||(40070966-40071003)
chr4 (189-234)||(56551582-56551627)
chr4 (189-229)||(10035296-10035336)
[»] chr8 (6 HSPs)
chr8 (197-234)||(32944951-32944988)
chr8 (197-235)||(24338202-24338240)
chr8 (197-234)||(11709012-11709049)
chr8 (197-234)||(12328729-12328766)
chr8 (189-234)||(45396590-45396635)
chr8 (201-229)||(27191789-27191817)
[»] chr7 (6 HSPs)
chr7 (198-235)||(17853188-17853225)
chr7 (197-234)||(47663381-47663418)
chr7 (197-234)||(3671850-3671887)
chr7 (190-234)||(19036093-19036137)
chr7 (190-234)||(20718499-20718543)
chr7 (198-230)||(35290034-35290066)
[»] chr6 (6 HSPs)
chr6 (201-234)||(21034010-21034043)
chr6 (189-235)||(12306346-12306392)
chr6 (189-234)||(12582219-12582264)
chr6 (197-234)||(23629835-23629872)
chr6 (189-234)||(34701173-34701218)
chr6 (190-234)||(1130811-1130855)
[»] chr3 (5 HSPs)
chr3 (189-234)||(8075811-8075856)
chr3 (197-234)||(51250231-51250268)
chr3 (190-229)||(45885468-45885507)
chr3 (189-234)||(1456530-1456575)
chr3 (189-234)||(25441490-25441535)
[»] chr1 (7 HSPs)
chr1 (189-234)||(42045362-42045407)
chr1 (189-235)||(41974786-41974832)
chr1 (189-234)||(3481587-3481632)
chr1 (201-234)||(7803431-7803464)
chr1 (189-234)||(14880854-14880899)
chr1 (197-234)||(22335384-22335421)
chr1 (189-234)||(33020033-33020078)
[»] scaffold1694 (1 HSPs)
scaffold1694 (189-234)||(181-226)
[»] scaffold0262 (1 HSPs)
scaffold0262 (189-234)||(15920-15965)
[»] chr5 (3 HSPs)
chr5 (201-234)||(2143159-2143192)
chr5 (189-234)||(6489033-6489078)
chr5 (189-229)||(3222762-3222802)
[»] scaffold0334 (1 HSPs)
scaffold0334 (198-234)||(5208-5244)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 691043 - 690882
Alignment:
Q  17 ttctctgagatcattttatcaagctgaactattttatgttccacatttatgcagggattcatcctcatctagtcttgattctcaaaaccctggatatgaa 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  691043 ttctctgagatcattttatcaagctcaactattttatgttccacatttatgcagggattcatcctcatctagtcttgattctcaaaaccctggatatgaa 690944  T
Q  117 gctggtaatggtcatggagttagtgatgggcatgtcacagagttgcgtagtcttaattgtag 178  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  690943 gctagtaatggtcatggagttagtgatgggcatgtcacagagttgcgtagtcttaattgtag 690882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 10724010 - 10723964
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatta 235  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  10724010 gtggtggccggggtttgaacctcagaccttgcatatattatgcatta 10723964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 15447704 - 15447744
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattat 229  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  15447704 gtggtggccggggtttgaactccagaccttgcatatattat 15447744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 690859 - 690814
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||| |||||||| |||||| ||||||||||||||||||    
T  690859 gtggtcgccggagtttgaacctcagacgttgcatatattatacatt 690814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 9389530 - 9389493
Alignment:
Q  198 ggggtttgaacttcagaccttgcatatattatacatta 235  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  9389530 ggggttcgaactccagaccttgcatatattatacatta 9389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 12303642 - 12303605
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  12303642 cgggatttgaacttcaaaccttgcatatattatacatt 12303605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 12413556 - 12413519
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  12413556 cggggtttgaacctcagaccttgcatatattatgcatt 12413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 12425616 - 12425579
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  12425616 cggggtttgaacctcagaccttgcatatattatgcatt 12425579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 17142893 - 17142856
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  17142893 cggggtttgaactccagactttgcatatattatacatt 17142856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 24592836 - 24592881
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  24592836 gtggtggccggggtttgaaccccagaccttgcatatattatgcatt 24592881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 43117189 - 43117225
Alignment:
Q  198 ggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  43117189 ggggtttgaacctcagaccttgcatatattatgcatt 43117225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 13121614 - 13121570
Alignment:
Q  190 tggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  13121614 tggtagccggggtttgaacttcagaccttgcatatattatgcatt 13121570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 38375028 - 38374983
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  38375028 gtggtggccggggtttgaactccagaccttgcatatattatgcatt 38374983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 43034332 - 43034377
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||    
T  43034332 gtggtggccggggtttgaacctcagaccttgcatatattatgcatt 43034377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 10564455 - 10564495
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattat 229  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  10564455 gtggtagccggggtttgaacctcagaccttacatatattat 10564495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 6610326 - 6610288
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatta 235  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  6610326 cggggtttgaaccccagaccttgcatatattatacatta 6610288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 2888945 - 2888900
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||  | ||||||||||||||||||||||    
T  2888945 gtggtggccggggtttgaaccgcggaccttgcatatattatacatt 2888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 17216128 - 17216165
Alignment:
Q  198 ggggtttgaacttcagaccttgcatatattatacatta 235  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  17216128 ggggttcgaacttcagaccttgcatatattatgcatta 17216165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 20403158 - 20403203
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||| | |||| ||||||||||||||||||||||||| ||||    
T  20403158 gtggtagctgaggttcgaacttcagaccttgcatatattatgcatt 20403203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 22630358 - 22630395
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  22630358 cggggtttgaacctcagaccttgcatatattatgcatt 22630395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 37930845 - 37930882
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  37930845 cggggtttgaacctcagaccttgcatatattatgcatt 37930882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 40070966 - 40071003
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  40070966 cggggtttgaacttcggaccttgcatatattatgcatt 40071003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 56551582 - 56551627
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| |||||||||||||| || ||||||||||||||||| ||||    
T  56551582 gtggtggccggggtttgaacctcggaccttgcatatattatgcatt 56551627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 10035336 - 10035296
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattat 229  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  10035336 gtggtggccggggtttgaaccccagaccttgcatatattat 10035296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 32944988 - 32944951
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  32944988 cggggtttgaacttcagaccttgcatatattatgcatt 32944951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 24338202 - 24338240
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatta 235  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  24338202 cggggtttgaacttcagaccttgcatattttatgcatta 24338240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 11709049 - 11709012
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  11709049 cggggtttgaacttcggaccttgcatatattatgcatt 11709012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 12328766 - 12328729
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  12328766 cggggtttgaacttcataccttgaatatattatacatt 12328729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 45396635 - 45396590
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| |||||| || ||||||||||||||||||||||||| ||||    
T  45396635 gtggtggccgggattcgaacttcagaccttgcatatattatgcatt 45396590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 27191817 - 27191789
Alignment:
Q  201 gtttgaacttcagaccttgcatatattat 229  Q
    |||||||||||||||||||||||||||||    
T  27191817 gtttgaacttcagaccttgcatatattat 27191789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 17853225 - 17853188
Alignment:
Q  198 ggggtttgaacttcagaccttgcatatattatacatta 235  Q
    |||||||||||| |||||||||||||||||||||||||    
T  17853225 ggggtttgaactccagaccttgcatatattatacatta 17853188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 47663381 - 47663418
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  47663381 cggggtttgaacttcagaccttgtatatattatacatt 47663418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 3671887 - 3671850
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  3671887 cggggtttgaactccagaccttgcatatattatgcatt 3671850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 19036093 - 19036137
Alignment:
Q  190 tggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||| ||||||||||||||| |||||||||||||| |||| ||||    
T  19036093 tggtggccggggtttgaactccagaccttgcatattttatgcatt 19036137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 20718543 - 20718499
Alignment:
Q  190 tggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||| ||||||||||||||| |||||||||||||| |||| ||||    
T  20718543 tggtggccggggtttgaactccagaccttgcatattttatgcatt 20718499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 35290066 - 35290034
Alignment:
Q  198 ggggtttgaacttcagaccttgcatatattata 230  Q
    ||||||||||||||||||||| |||||||||||    
T  35290066 ggggtttgaacttcagaccttccatatattata 35290034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 21034043 - 21034010
Alignment:
Q  201 gtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  21034043 gtttgaacttcagaccttgcatatattatacatt 21034010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 12306392 - 12306346
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatta 235  Q
    ||||| |||||||||||||| ||||||||| |||||||||| |||||    
T  12306392 gtggtggccggggtttgaacctcagaccttacatatattattcatta 12306346  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 12582219 - 12582264
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||    
T  12582219 gtggtggccggggtttgaactccagaccttgcatattttatgcatt 12582264  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 23629835 - 23629872
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  23629835 cggggtttgaacttcataccttgcatatattatgcatt 23629872  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 34701218 - 34701173
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||| |||||||| |||||||||||||||||||| ||||    
T  34701218 gtggtggccggagtttgaacctcagaccttgcatatattatgcatt 34701173  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 1130855 - 1130811
Alignment:
Q  190 tggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||| |||||||||||||  |||||||||||||||| ||||||||    
T  1130855 tggtggccggggtttgaagctcagaccttgcatatactatacatt 1130811  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 8075856 - 8075811
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||    
T  8075856 gtggtggccggggtttgaacctcagaccttgcatatattatgcatt 8075811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 51250231 - 51250268
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  51250231 cggggtttgaacttcaggccttgcatatattatacatt 51250268  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 45885468 - 45885507
Alignment:
Q  190 tggtagccggggtttgaacttcagaccttgcatatattat 229  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  45885468 tggtggccggggtttgaacctcagaccttgcatatattat 45885507  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 1456530 - 1456575
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| |||| | ||||||| |||||||||||||||||||||||||    
T  1456530 gtggtggccgagttttgaacctcagaccttgcatatattatacatt 1456575  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 25441490 - 25441535
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  25441490 gtggtggccggggtttgaaccccagaccttgcatatattatgcatt 25441535  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 42045362 - 42045407
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  42045362 gtggtggccggggtttgaactccagaccttgcatatattatgcatt 42045407  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 41974832 - 41974786
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatta 235  Q
    ||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  41974832 gtggtggccggggtttgaacctcaaaccttgcatatattatgcatta 41974786  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 3481632 - 3481587
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  3481632 gtggtggccggggtttgaaccccagaccttgcatatattatgcatt 3481587  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 7803464 - 7803431
Alignment:
Q  201 gtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||| |||||||||||||||||||||||||    
T  7803464 gtttgaacctcagaccttgcatatattatacatt 7803431  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 14880899 - 14880854
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| |||||| ||||||| |||||||||||||||||||| ||||    
T  14880899 gtggttgccgggatttgaacctcagaccttgcatatattatgcatt 14880854  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 22335421 - 22335384
Alignment:
Q  197 cggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  22335421 cggggtttgaacctcagaccttgcatatattatgcatt 22335384  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 33020033 - 33020078
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| || ||||||||||| |||||||||||||||||||| ||||    
T  33020033 gtggtggctggggtttgaacctcagaccttgcatatattatgcatt 33020078  T

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Target: scaffold1694 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 226 - 181
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    |||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  226 gtggtagccgaggtttgaacctcagaccttgcatacattatgcatt 181  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 15920 - 15965
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| || |||||||||||  ||||||||||||||||||||||||    
T  15920 gtggtggctggggtttgaaccccagaccttgcatatattatacatt 15965  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 2143192 - 2143159
Alignment:
Q  201 gtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||| ||||||||||||||||||||||    
T  2143192 gtttgaacttcggaccttgcatatattatacatt 2143159  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 6489078 - 6489033
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  6489078 gtggtggccggggtttgaaccccagaccttgcatatattatgcatt 6489033  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 3222802 - 3222762
Alignment:
Q  189 gtggtagccggggtttgaacttcagaccttgcatatattat 229  Q
    |||||| |||||||| |||| ||||||||||||||||||||    
T  3222802 gtggtatccggggttcgaacctcagaccttgcatatattat 3222762  T

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Target: scaffold0334 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 5244 - 5208
Alignment:
Q  198 ggggtttgaacttcagaccttgcatatattatacatt 234  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  5244 ggggtttgaacctcagaccttgcatatattatgcatt 5208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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