View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_low_5 (Length: 511)

Name: NF1696_low_5
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_low_5
NF1696_low_5
[»] chr7 (20 HSPs)
chr7 (252-501)||(36221990-36222234)
chr7 (18-187)||(36221757-36221926)
chr7 (252-465)||(36217999-36218207)
chr7 (258-468)||(35938799-35939004)
chr7 (278-469)||(32727038-32727224)
chr7 (18-186)||(36217766-36217934)
chr7 (261-469)||(35976915-35977118)
chr7 (261-469)||(35998327-35998530)
chr7 (258-465)||(35981485-35981687)
chr7 (258-465)||(36002897-36003099)
chr7 (18-147)||(32727359-32727488)
chr7 (346-469)||(35957460-35957583)
chr7 (278-450)||(35946271-35946438)
chr7 (261-451)||(35951909-35952094)
chr7 (18-147)||(35981797-35981926)
chr7 (18-147)||(36003209-36003338)
chr7 (39-186)||(35946529-35946676)
chr7 (39-147)||(35977231-35977339)
chr7 (39-147)||(35998643-35998751)
chr7 (18-130)||(35939131-35939243)
[»] chr1 (4 HSPs)
chr1 (261-466)||(18125183-18125383)
chr1 (337-466)||(18117530-18117659)
chr1 (77-147)||(18125496-18125566)
chr1 (19-186)||(18117804-18117971)
[»] chr2 (2 HSPs)
chr2 (365-469)||(26329140-26329244)
chr2 (18-114)||(26328799-26328895)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 252 - 501
Target Start/End: Original strand, 36221990 - 36222234
Alignment:
Q  252 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  352 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 36222184  T
Q  452 ttgtatcccaaagattattcattttctattgttgaaattacttgtctgtg 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222185 ttgtatcccaaagattattcattttctattgttgaaattacttgtctgtg 36222234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 36221757 - 36221926
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||     
T  36221757 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacatgtagtaactcaattgcttccatgatgagtac 36221856  T
Q  118 tgttccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcattt 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221857 tgttccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggcattt 36221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 252 - 465
Target Start/End: Original strand, 36217999 - 36218207
Alignment:
Q  252 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 351  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  352 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 451  Q
     ||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||| |||| || |||||||||| |||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttcc 36218193  T
Q  452 ttgtatcccaaaga 465  Q
    ||||||||||||||    
T  36218194 ttgtatcccaaaga 36218207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 258 - 468
Target Start/End: Complemental strand, 35939004 - 35938799
Alignment:
Q  258 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 357  Q
    |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||  ||| ||||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  358 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 457  Q
     |||||||| ||| ||  |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| | |||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatat 35938810  T
Q  458 cccaaagatta 468  Q
    |||||||||||    
T  35938809 cccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 278 - 469
Target Start/End: Complemental strand, 32727224 - 32727038
Alignment:
Q  278 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 377  Q
    ||||||| |||||||  |||||||||||| ||||||||||     ||||||||||| || |||||   |||||| ||||| |||||||| ||||||| ||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatg 32727130  T
Q  378 atattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 469  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||  |||||| | |||||||||||||||    
T  32727129 atattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 32727038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 36217766 - 36217934
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtat 117  Q
    |||||||||||||||||  | |||||||||||||||||| || || ||||||| | |||||||| |||||||| |||||| ||||||||||||||||||     
T  36217766 caaaatggattgagttggaagatttgatcaaagttggtgcagtaggaagtaaaattatagtgaccacacgtagcaactcagttgcttccatgatgggtac 36217865  T
Q  118 tgttccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 186  Q
    ||||||||||||| |||||||||||||||||  ||||   | ||||| | |||||||||||||||||||    
T  36217866 tgttccttcgtatgttttggaaggtctttcgttagaggattgtttgtctctgtttgtgaaatgggcatt 36217934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 261 - 469
Target Start/End: Complemental strand, 35977118 - 35976915
Alignment:
Q  261 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 360  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  361 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 460  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| |||| ||||| | ||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatccc 35976924  T
Q  461 aaagattat 469  Q
    |||||||||    
T  35976923 aaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 261 - 469
Target Start/End: Complemental strand, 35998530 - 35998327
Alignment:
Q  261 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 360  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  361 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 460  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| |||| ||||| | ||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatccc 35998336  T
Q  461 aaagattat 469  Q
    |||||||||    
T  35998335 aaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 258 - 465
Target Start/End: Complemental strand, 35981687 - 35981485
Alignment:
Q  258 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 357  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||||||     |||||| |||| ||||| ||   |||| | |||||    
T  35981687 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaat-----aagtgggtatttgtaagggattctgagttatggaa 35981593  T
Q  358 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 457  Q
      |||| || ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||    
T  35981592 tctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctat 35981493  T
Q  458 cccaaaga 465  Q
    ||||||||    
T  35981492 cccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 258 - 465
Target Start/End: Complemental strand, 36003099 - 36002897
Alignment:
Q  258 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 357  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||||||     |||||| |||| ||||| ||   |||| | |||||    
T  36003099 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaat-----aagtgggtatttgtaagggattctgagttatggaa 36003005  T
Q  358 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 457  Q
      |||| || ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||    
T  36003004 tctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctat 36002905  T
Q  458 cccaaaga 465  Q
    ||||||||    
T  36002904 cccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 32727488 - 32727359
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtat 117  Q
    ||||||||||||||||| || ||||||| ||||| |||| || || ||| ||| ||||||||||||||||||| |||||| ||||||| ||||||||||     
T  32727488 caaaatggattgagttgatagatttgataaaagtcggtgcagcaggaagcaaaatcatagtgacgacacgtagcaactcatttgcttcaatgatgggtac 32727389  T
Q  118 tgttccttcgtatattttggaaggtctttc 147  Q
    | |||| |||||  ||||||||||||||||    
T  32727388 tattccctcgtacgttttggaaggtctttc 32727359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 469
Target Start/End: Complemental strand, 35957583 - 35957460
Alignment:
Q  346 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 445  Q
    |||||| ||||| |||||||||||||    |||||||||||||||  |||||||||| |||||| |||||||||| ||| |||| || ||||||||||||    
T  35957583 tgagatgtggaatttagaacaaaagattaatgatattttacctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttat 35957484  T
Q  446 ttttccttgtatcccaaagattat 469  Q
    |||||| | |||||||||||||||    
T  35957483 ttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 450
Target Start/End: Complemental strand, 35946438 - 35946271
Alignment:
Q  278 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 377  Q
    |||||||| ||||||||| |||||||| |||||| ||| |     ||||||  |||||| || |||  |||||| ||||| |||||||||||||||| ||    
T  35946438 aacattagcaagttctctcttctcaaactttgatataagt-----aagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatg 35946344  T
Q  378 atattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttc 450  Q
    |||| ||||||||  |||||||||| |||||| |||||||||| ||| | || || |||||||||||||||||    
T  35946343 atatcttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttatttttc 35946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 451
Target Start/End: Complemental strand, 35952094 - 35951909
Alignment:
Q  261 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 360  Q
    ||||| |||||||| ||| |||| |||||||| || |||||||| || ||||||| |     ||||||  ||| || ||||||  ||  |||||||| ||    
T  35952094 gttccactggctgtgaaatcattgggaagttccctcttctcaaacttcgatttaagt-----aagtgggaatttgtcagagactctgctatttggaattt 35952000  T
Q  361 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 451  Q
    ||||||| |||||| |||||||||||||||  | ||||||||||||||| ||||| |||||||| | || |||||| |||| | |||||||    
T  35951999 agaacaacagaaagatgatattttacctgccctgaaattaagctatgatcaaatgtcatcctatctaagacattgtattgcctctttttcc 35951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 35981926 - 35981797
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtat 117  Q
    |||||||||||||||||  | |||||||||||||||| | ||  | ||| ||| |  | ||||| |||||||||||||||||| |||| |||||||||      
T  35981926 caaaatggattgagttgaaagatttgatcaaagttggcgcagctggaagcaaaattttggtgactacacgtagtaactcaatttcttcgatgatgggtga 35981827  T
Q  118 tgttccttcgtatattttggaaggtctttc 147  Q
    ||||||| ||||| ||||| ||||||||||    
T  35981826 tgttcctccgtatcttttgaaaggtctttc 35981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 36003338 - 36003209
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtat 117  Q
    |||||||||||||||||  | |||||||||||||||| | ||  | ||| ||| |  | ||||| |||||||||||||||||| |||| |||||||||      
T  36003338 caaaatggattgagttgaaagatttgatcaaagttggcgcagctggaagcaaaattttggtgactacacgtagtaactcaatttcttcgatgatgggtga 36003239  T
Q  118 tgttccttcgtatattttggaaggtctttc 147  Q
    ||||||| ||||| ||||| ||||||||||    
T  36003238 tgttcctccgtatcttttgaaaggtctttc 36003209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 35946676 - 35946529
Alignment:
Q  39 atttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtattgttccttcgtatattttgga 138  Q
    ||||||| |||||||||| |  || ||| ||| | || ||||| ||||| |||||| |||||||||| |||||||||  ||||||| | |||||||||||    
T  35946676 atttgataaaagttggtgcaccaggaagcaaaattatggtgacaacacgcagtaacgcaattgcttcgatgatgggtgatgttcctccatatattttgga 35946577  T
Q  139 aggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 186  Q
    ||||||||| | | |||  | ||||| | ||||||| |||||||||||    
T  35946576 aggtctttctccaaagaattgtttgtctctgtttgtcaaatgggcatt 35946529  T

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Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 35977339 - 35977231
Alignment:
Q  39 atttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtattgttccttcgtatattttgga 138  Q
    ||||||| |||||||||| |  || ||| ||| | || ||||| ||||||||||||||||||||||| |||||||||  ||||||| | ||| ||||| |    
T  35977339 atttgataaaagttggtgcaccaggaagcaaaattatcgtgacaacacgtagtaactcaattgcttcgatgatgggtgatgttcctccatatcttttgaa 35977240  T
Q  139 aggtctttc 147  Q
    |||||||||    
T  35977239 aggtctttc 35977231  T

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Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 35998751 - 35998643
Alignment:
Q  39 atttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtattgttccttcgtatattttgga 138  Q
    ||||||| |||||||||| |  || ||| ||| | || ||||| ||||||||||||||||||||||| |||||||||  ||||||| | ||| ||||| |    
T  35998751 atttgataaaagttggtgcaccaggaagcaaaattatcgtgacaacacgtagtaactcaattgcttcgatgatgggtgatgttcctccatatcttttgaa 35998652  T
Q  139 aggtctttc 147  Q
    |||||||||    
T  35998651 aggtctttc 35998643  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 35939243 - 35939131
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtat 117  Q
    |||||||||||||||||  | ||||||| ||||||||   || |||| | ||| |||| ||||| ||||| ||||| || |||||||| |||| ||| |     
T  35939243 caaaatggattgagttgaaagatttgataaaagttggcacagtagaatgcaaaatcattgtgacaacacgcagtaaatcgattgcttcaatgacgggcac 35939144  T
Q  118 tgttccttcgtat 130  Q
    |||||| ||||||    
T  35939143 tgttccctcgtat 35939131  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 261 - 466
Target Start/End: Complemental strand, 18125383 - 18125183
Alignment:
Q  261 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 360  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||||||||||||||||  |     |||||||| ||||||||   |||| | ||||| ||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaattt 18125289  T
Q  361 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 460  Q
    | ||||  | |||| |||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||||| || ||||||||||| ||| | |||||     
T  18125288 aaaacagcaaaaagatgatattttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcct 18125189  T
Q  461 aaagat 466  Q
    ||||||    
T  18125188 aaagat 18125183  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 18117659 - 18117530
Alignment:
Q  337 aagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgt 436  Q
    |||||||  |||||| ||||  |||||||||||| ||  |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||     
T  18117659 aagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgc 18117560  T
Q  437 tttgcttatttttccttgtatcccaaagat 466  Q
    ||||||||  || |  ||||||||||||||    
T  18117559 tttgcttacattgctatgtatcccaaagat 18117530  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 18125566 - 18125496
Alignment:
Q  77 gtgacgacacgtagtaactcaattgcttccatgatgggtattgttccttcgtatattttggaaggtctttc 147  Q
    ||||| ||||||| ||||||||||||||| |||||||||| |||||| || ||| ||||| ||||||||||    
T  18125566 gtgacaacacgtaataactcaattgcttcgatgatgggtaatgttccctcatatgttttgcaaggtctttc 18125496  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 18117971 - 18117804
Alignment:
Q  19 aaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatgggtatt 118  Q
    ||||||||| ||||||  | ||||||| ||||||||   || || ||| |||||||| | ||| ||||| || ||||||||||| || |||||||||| |    
T  18117971 aaaatggatcgagttgaaagatttgattaaagttggcacagtaggaagcaaagtcatggcgacaacacgcagcaactcaattgcatcgatgatgggtact 18117872  T
Q  119 gttccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 186  Q
    ||||| || ||| ||||  |||| |||||    || | || ||| | |||||||||||||||||||||    
T  18117871 gttccctcctatgttttaaaaggcctttctattgaaaactgtttatctttgtttgtgaaatgggcatt 18117804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 26329140 - 26329244
Alignment:
Q  365 caaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaag 464  Q
    ||||| |||| ||||||||||||||   | || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | | ||||||||    
T  26329140 caaaacaaagatgatattttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaag 26329239  T
Q  465 attat 469  Q
    |||||    
T  26329240 attat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 26328799 - 26328895
Alignment:
Q  18 caaaatggattgagttgttaaatttgatcaaagttggtggagaagaaagtaaagtcatagtgacgacacgtagtaactcaattgcttccatgatggg 114  Q
    |||||||||||||||||  | || |||| |||||||||| || |||||| ||| || ||||||| |||||||||||||  |||||||| ||||||||    
T  26328799 caaaatggattgagttgaaagatctgataaaagttggtgcagtagaaagcaaaatcttagtgacaacacgtagtaacttgattgcttcgatgatggg 26328895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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