View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_51 (Length: 225)
Name: NF1696_low_51
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 44764225 - 44764009
Alignment:
| Q |
1 |
tatttcttggtcagtttctcattcattgggttctgttttaatattttgatttcttattttatgcaaaaactggtgtaatatgatttcaatttaattatta |
100 |
Q |
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| T |
44764225 |
tatttcttggtcagtttctcattcattgggttttgttttaatattttgatttcttattttatacaaaaactggtgtaatatgatttcaatttaattatta |
44764126 |
T |
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| Q |
101 |
cacaccgacagtgtaaagttattttgtaaattcgtctcattttatttgcaggagaagtgtttgggctaattattgtttgtcattcgataacaacaagctc |
200 |
Q |
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| T |
44764125 |
cacaccgacagtgtaaagttattttgtaaattcgtctcattttatttgcaggagaagtgtttgggctaattattgtttgtcattcgataacaacaagctc |
44764026 |
T |
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| Q |
201 |
cttaacgatgatgatgt |
217 |
Q |
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| T |
44764025 |
cttaacgatgatgatgt |
44764009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 28357471 - 28357381
Alignment:
| Q |
127 |
taaattcgtctcattttatttgcaggagaagtgtttgggctaattattgtttgtcattcgataacaacaagctccttaacgatgatgatgt |
217 |
Q |
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| T |
28357471 |
taaattcatctcattttatttgcaggagaagtgtttgggctaattattgtttgtcattcgataacaacaagctccttaacgatgatgatgt |
28357381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 28357659 - 28357588
Alignment:
| Q |
53 |
cttattttatgcaaaaactggtgtaatatgatttcaatttaattattacacaccgacagtgtaaagttatttt |
125 |
Q |
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| T |
28357659 |
cttattttatgcaaaaactggtgtaatatgatttgaatttaattattacacaccaacagt-taaagttatttt |
28357588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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