View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1696_low_54 (Length: 223)
Name: NF1696_low_54
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 2871847 - 2872045
Alignment:
| Q |
9 |
cgaagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttggccagttcacatggagtt |
108 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2871847 |
cgaagaagatgatgaagaagccctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttggccagttcacatggagtt |
2871946 |
T |
|
| Q |
109 |
gccaatgagattattgatatagataaacttggagttcaagaaagacataaacttttgaataggttgatcaaagctgctgaagaggataatgaaaagttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2871947 |
gccaatgagattattgatatagataaacttggagttcaagaaagacagaaacttttgaataggttgatcaaagctgctgaagaggataatgaaaagttt |
2872045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 2902926 - 2902738
Alignment:
| Q |
19 |
gatgaagaagctctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttggccagttcacatggagttgccaatgaga |
118 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||||| ||||| || ||||||| ||||||||||||||| | || | ||||||||| ||||||| |
|
|
| T |
2902926 |
gatgaagaagctcttagatgggctgcacttgaaaaactcccgacttataaccgtttaaggaaagggttgttggcgacatcgcgtggagttgcaaatgaga |
2902827 |
T |
|
| Q |
119 |
tt-attgatatagataaacttggagttcaagaaagacataaacttttgaataggttgatcaaagctgctgaagaggataatgaaaagttt |
207 |
Q |
| |
|
|| || || || | | |||||| ||||||||||||| ||||| ||| ||||||||||||| | ||||||||||| ||||| |||||| |
|
|
| T |
2902826 |
ttgatatat-taagtgatcttggatttcaagaaagacaaaaactattggataggttgatcaatgttgctgaagagggaaatgagaagttt |
2902738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 2882148 - 2882335
Alignment:
| Q |
17 |
atgatgaagaagctctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttggccagttcacatggagttgccaatga |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| | |||||| |||||||| | || | ||||||||| ||||| |
|
|
| T |
2882148 |
atgatgaagaagctcttaaatgggctgcacttgaaaaactccctacttataaccgtttgaggaaaggattgttggcgacatcgcgtggagttgctaatga |
2882247 |
T |
|
| Q |
117 |
gattattgatatagataaacttggagttcaagaaagacataaacttttgaataggttgatcaaagctgctgaagaggataatgaaaagttt |
207 |
Q |
| |
|
| |||||||| | |||||| ||||||| | ||| ||||| ||| |||||||||| || | ||||||||||| |||||||||||| |
|
|
| T |
2882248 |
g---gttgatataacagatcttggatttcaagagaaacagaaactcttggataggttgattaatgttgctgaagagggaaatgaaaagttt |
2882335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 44215207 - 44215127
Alignment:
| Q |
10 |
gaagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttg |
90 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||| |
|
|
| T |
44215207 |
gaagaagatgatgaagaagctctcaaatgggctgcacttgaaaaactacctacttacaatcgtctaagaaaaggtttgttg |
44215127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 44238498 - 44238418
Alignment:
| Q |
10 |
gaagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttg |
90 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
44238498 |
gaagaagatgatgaagaagctcttaaatgggctgcccttgaaaaactacctacttacaatcgtctaagaaaagggttgttg |
44238418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 44227365 - 44227285
Alignment:
| Q |
10 |
gaagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctacttacaatcgtttaaagaaagggttgttg |
90 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||| || |||||||| |||||| ||| ||||| |||||| |
|
|
| T |
44227365 |
gaagaagatgatgaagaagctctcaaatgggctgcacttgaaaagctacctacttataatcgtctaagaaaaggtttgttg |
44227285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 39344151 - 39344204
Alignment:
| Q |
11 |
aagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctactt |
64 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
39344151 |
aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt |
39344204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 39552820 - 39552767
Alignment:
| Q |
11 |
aagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctactt |
64 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
39552820 |
aagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt |
39552767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 39543597 - 39543544
Alignment:
| Q |
11 |
aagaaaatgatgaagaagctctcaaatgggctgcaattgaaaaactccctactt |
64 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| ||| | ||||| ||||||| |
|
|
| T |
39543597 |
aagaagatgatgaagaagctcttaaatgggctgccattcagaaacttcctactt |
39543544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 4494209 - 4494246
Alignment:
| Q |
19 |
gatgaagaagctctcaaatgggctgcaattgaaaaact |
56 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4494209 |
gatgaagaagctcttaaatgggctgcaattgagaaact |
4494246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University