View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_low_7 (Length: 446)

Name: NF1696_low_7
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_low_7
NF1696_low_7
[»] chr2 (22 HSPs)
chr2 (63-361)||(4098366-4098664)
chr2 (12-63)||(20372327-20372378)
chr2 (13-66)||(17687413-17687466)
chr2 (391-430)||(4098326-4098365)
chr2 (12-63)||(14582925-14582976)
chr2 (12-63)||(15944571-15944622)
chr2 (12-63)||(15953086-15953137)
chr2 (12-63)||(20621518-20621569)
chr2 (12-63)||(35138593-35138644)
chr2 (12-63)||(35146929-35146980)
chr2 (12-63)||(41233858-41233909)
chr2 (12-66)||(42574567-42574621)
chr2 (12-63)||(38168371-38168422)
chr2 (12-63)||(42565943-42565994)
chr2 (12-63)||(44372705-44372756)
chr2 (12-63)||(44388616-44388667)
chr2 (30-63)||(25483601-25483634)
chr2 (30-63)||(25491207-25491240)
chr2 (30-63)||(42249487-42249520)
chr2 (34-64)||(24285695-24285725)
chr2 (30-64)||(34070636-34070670)
chr2 (34-63)||(24292372-24292401)
[»] chr8 (11 HSPs)
chr8 (12-63)||(17664654-17664705)
chr8 (12-63)||(17683810-17683861)
chr8 (12-63)||(4839796-4839847)
chr8 (12-63)||(17973565-17973616)
chr8 (12-63)||(26873618-26873669)
chr8 (12-63)||(26876068-26876119)
chr8 (12-63)||(30938282-30938333)
chr8 (12-63)||(1407087-1407138)
chr8 (12-63)||(39837576-39837627)
chr8 (12-63)||(39845619-39845670)
chr8 (12-63)||(25579826-25579877)
[»] chr7 (8 HSPs)
chr7 (12-63)||(10439937-10439988)
chr7 (12-64)||(18304406-18304458)
chr7 (12-63)||(4941591-4941642)
chr7 (12-63)||(12978455-12978506)
chr7 (12-63)||(4952411-4952462)
chr7 (12-63)||(13831500-13831551)
chr7 (12-63)||(13839531-13839582)
chr7 (30-63)||(30244775-30244808)
[»] chr6 (15 HSPs)
chr6 (12-63)||(15391625-15391676)
chr6 (12-63)||(5004061-5004112)
chr6 (12-63)||(5489133-5489184)
chr6 (12-63)||(5994699-5994750)
chr6 (12-63)||(23925335-23925386)
chr6 (12-63)||(33298085-33298136)
chr6 (13-63)||(25550295-25550345)
chr6 (13-63)||(35091691-35091741)
chr6 (14-63)||(30824545-30824594)
chr6 (12-64)||(13825702-13825754)
chr6 (12-63)||(11279837-11279888)
chr6 (12-63)||(25506555-25506606)
chr6 (30-63)||(13490193-13490226)
chr6 (12-61)||(25991852-25991901)
chr6 (30-63)||(11053702-11053735)
[»] chr5 (16 HSPs)
chr5 (12-63)||(29186292-29186343)
chr5 (12-63)||(20372927-20372978)
chr5 (12-63)||(20398649-20398700)
chr5 (12-63)||(24956860-24956911)
chr5 (12-63)||(24965323-24965374)
chr5 (12-63)||(1728173-1728224)
chr5 (12-63)||(28843940-28843991)
chr5 (12-63)||(28852550-28852601)
chr5 (12-63)||(31421789-31421840)
chr5 (12-63)||(43598060-43598111)
chr5 (12-63)||(43603552-43603603)
chr5 (12-63)||(43609044-43609095)
chr5 (30-63)||(19223555-19223588)
chr5 (12-63)||(23350090-23350141)
chr5 (12-63)||(31410890-31410941)
chr5 (30-66)||(41099808-41099844)
[»] scaffold0156 (1 HSPs)
scaffold0156 (12-66)||(35370-35424)
[»] chr3 (20 HSPs)
chr3 (12-66)||(17628262-17628316)
chr3 (12-64)||(2211238-2211290)
chr3 (12-63)||(28470231-28470282)
chr3 (12-63)||(50824352-50824403)
chr3 (12-63)||(50851457-50851508)
chr3 (12-63)||(8154658-8154709)
chr3 (12-63)||(9525448-9525499)
chr3 (12-63)||(41006556-41006607)
chr3 (12-63)||(41015336-41015387)
chr3 (13-63)||(14538620-14538670)
chr3 (13-63)||(27341350-27341400)
chr3 (30-63)||(30508-30541)
chr3 (30-63)||(8197728-8197761)
chr3 (16-65)||(9555126-9555175)
chr3 (30-63)||(17919199-17919232)
chr3 (12-63)||(17933655-17933706)
chr3 (33-63)||(18039011-18039041)
chr3 (36-65)||(6973261-6973290)
chr3 (30-67)||(18349552-18349589)
chr3 (36-64)||(13604165-13604193)
[»] chr1 (9 HSPs)
chr1 (12-64)||(31539953-31540005)
chr1 (12-63)||(31548523-31548574)
chr1 (12-63)||(35104078-35104129)
chr1 (12-63)||(3432904-3432955)
chr1 (30-64)||(21498930-21498964)
chr1 (12-63)||(29221502-29221553)
chr1 (33-63)||(44320227-44320257)
chr1 (30-63)||(20314059-20314092)
chr1 (33-61)||(28457556-28457584)
[»] scaffold0497 (1 HSPs)
scaffold0497 (12-63)||(10993-11044)
[»] scaffold0016 (1 HSPs)
scaffold0016 (12-63)||(23464-23515)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-63)||(121228-121279)
[»] chr4 (9 HSPs)
chr4 (12-63)||(12996476-12996527)
chr4 (12-63)||(21532318-21532369)
chr4 (12-63)||(52295604-52295655)
chr4 (14-63)||(8094298-8094347)
chr4 (14-63)||(8103104-8103153)
chr4 (12-63)||(10638328-10638379)
chr4 (12-63)||(27343705-27343756)
chr4 (30-63)||(12428510-12428543)
chr4 (12-64)||(4523694-4523746)
[»] scaffold0991 (1 HSPs)
scaffold0991 (30-66)||(405-441)
[»] scaffold0111 (1 HSPs)
scaffold0111 (15-63)||(33035-33083)
[»] scaffold0209 (1 HSPs)
scaffold0209 (12-63)||(98-149)
[»] scaffold0083 (1 HSPs)
scaffold0083 (12-63)||(15813-15864)
[»] scaffold0039 (1 HSPs)
scaffold0039 (12-63)||(40847-40898)
[»] scaffold0048 (1 HSPs)
scaffold0048 (17-63)||(7648-7694)
[»] scaffold0431 (1 HSPs)
scaffold0431 (30-63)||(139-172)
[»] scaffold0015 (1 HSPs)
scaffold0015 (30-63)||(192528-192561)
[»] scaffold0222 (1 HSPs)
scaffold0222 (34-66)||(20518-20550)
[»] scaffold0173 (1 HSPs)
scaffold0173 (12-63)||(943-994)
[»] scaffold0027 (1 HSPs)
scaffold0027 (28-63)||(65708-65743)
[»] scaffold0863 (1 HSPs)
scaffold0863 (34-63)||(408-437)
[»] scaffold0170 (1 HSPs)
scaffold0170 (32-65)||(7224-7257)
[»] scaffold0044 (1 HSPs)
scaffold0044 (30-63)||(81818-81851)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 63 - 361
Target Start/End: Complemental strand, 4098664 - 4098366
Alignment:
Q  63 acatggtatctgaattgctagaggggcttttgtaggaaagtcaaaacaacaagtattcaacttttcccaagatatggggtggaagaaactaaaagggtgg 162  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4098664 acatggtatctgaattgctagaggggtttttgtaggaaagtcaaaacaacaagtattcaacttttcccaagatatggggtggaagaaactaaaagggtgg 4098565  T
Q  163 aaatgaaacttcttacctttttcagcgaggaaggtccttattaaagcagttattcaagtcattcctacttatgtcatgagttttttaaagcttccggata 262  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4098564 aaatgaaacttcttacctttttcagcggggaaggtccttattaaagcagttatttaagtcattcctacttatgtcatgagttttttaaagcttccggata 4098465  T
Q  263 gcttttgcgaccacattgaaagcatgatttgtaaattttggtggtgatgcaaacaagatgaataaaaagtacattaaattgcttggaatacattatgtg 361  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4098464 gcttttgcgaccacattgaaagcatgatttgtaaattttgatggtgatgcaaacaagatgaataaaaagtacattaaattgcttggaatacgttatgtg 4098366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 20372327 - 20372378
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20372327 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 20372378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17687413 - 17687466
Alignment:
Q  13 gaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacacat 66  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  17687413 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 17687466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 430
Target Start/End: Complemental strand, 4098365 - 4098326
Alignment:
Q  391 tagctaagcaaggttggcggattttgcagaatgaagaaat 430  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4098365 tagctaagcaaggttggcggattttgcagaatgaagaaat 4098326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 14582976 - 14582925
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  14582976 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 14582925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 15944571 - 15944622
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  15944571 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 15953086 - 15953137
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  15953086 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 20621569 - 20621518
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  20621569 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20621518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 35138644 - 35138593
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  35138644 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 35146980 - 35146929
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  35146980 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 41233858 - 41233909
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  41233858 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 42574567 - 42574621
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacacat 66  Q
    |||||||||| || ||| |||||| ||||||||||||||||||||||||||||||    
T  42574567 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacacat 42574621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 38168371 - 38168422
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||| ||||||||    
T  38168371 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggagtatgaca 38168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42565943 - 42565994
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  42565943 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 44372756 - 44372705
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || || |||||| ||||||||||||||||||||||||||||    
T  44372756 cgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgaca 44372705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 44388667 - 44388616
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || || |||||| ||||||||||||||||||||||||||||    
T  44388667 cgaataaaatgggtaaagatagaaaaaagtggtcaaaatttggggtatgaca 44388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 25483634 - 25483601
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  25483634 atagagaaaagtggtcaaaatttggggtatgaca 25483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 25491240 - 25491207
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  25491240 atagagaaaagtggtcaaaatttggggtatgaca 25491207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 42249487 - 42249520
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  42249487 atagagaaaagtggtcaaaatttggggtatgaca 42249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 24285725 - 24285695
Alignment:
Q  34 agaaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||||||||||||||||||||||||    
T  24285725 agaaaagtggtcaaaatttggggtatgacac 24285695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 34070636 - 34070670
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgacac 64  Q
    ||||||||||||| |||||||||||||||||||||    
T  34070636 atagagaaaagtgatcaaaatttggggtatgacac 34070670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 24292401 - 24292372
Alignment:
Q  34 agaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||    
T  24292401 agaaaagtggtcaaaatttggggtatgaca 24292372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 17664654 - 17664705
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17664654 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17664705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 17683810 - 17683861
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17683810 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 4839796 - 4839847
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  4839796 cgaataaaataggtaagaatagagaaaagcggtcaaaatttggggtatgaca 4839847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 17973616 - 17973565
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  17973616 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 26873618 - 26873669
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  26873618 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 26873669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 26876068 - 26876119
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  26876068 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 26876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 30938333 - 30938282
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  30938333 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 1407087 - 1407138
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  1407087 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1407138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 39837576 - 39837627
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  39837576 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39837627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 39845619 - 39845670
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  39845619 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 25579826 - 25579877
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||| ||||||||||||||||| ||||||||||    
T  25579826 cgaataaaatgggtaagaatagataaaagtggtcaaaatttagggtatgaca 25579877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 10439988 - 10439937
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  10439988 cgaataaaatgggcaagaatagagaaaagtggtcaaaatttggggtatgaca 10439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 18304406 - 18304458
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  18304406 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 18304458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 4941591 - 4941642
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  4941591 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 4941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 12978506 - 12978455
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  12978506 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 4952411 - 4952462
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||| |||||||||||||||||| |||||||||    
T  4952411 cgaataaaatgggtaagaatagataaaagtggtcaaaatttgaggtatgaca 4952462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 13831551 - 13831500
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||| ||||||||||    
T  13831551 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttagggtatgaca 13831500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 13839582 - 13839531
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |  ||| |||||| |||||||||||||||||||||||||||    
T  13839582 cgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 13839531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 30244808 - 30244775
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||||||||||||||||| |||||||||    
T  30244808 atagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 15391625 - 15391676
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  15391625 cgaataaaatgggcaaggatagagaaaagtggtcaaaatttgggatatgaca 15391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 5004112 - 5004061
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  5004112 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 5489133 - 5489184
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  5489133 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5489184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 5994750 - 5994699
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  5994750 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 23925386 - 23925335
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  23925386 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23925335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 33298136 - 33298085
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  33298136 cgaataaaatgggtaaggatagagaaaagtggtcaaaagttggggtatgaca 33298085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 25550345 - 25550295
Alignment:
Q  13 gaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  25550345 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 25550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 35091691 - 35091741
Alignment:
Q  13 gaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  35091691 gaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 30824545 - 30824594
Alignment:
Q  14 aataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  30824545 aataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 13825754 - 13825702
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||| || ||| ||||||||||||| |||||||||||||||||||||    
T  13825754 cgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgacac 13825702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 11279888 - 11279837
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  11279888 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 11279837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 25506555 - 25506606
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||| ||||||||||||||||||||    
T  25506555 cgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 25506606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 13490226 - 13490193
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  13490226 atagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 25991901 - 25991852
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatga 61  Q
    |||||||||| || ||| |||||||||||||||||| |||||||||||||    
T  25991901 cgaataaaatgggtaagaatagagaaaagtggtcaacatttggggtatga 25991852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 11053735 - 11053702
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||| ||||||||||||||||||||||||||||    
T  11053735 atagaaaaaagtggtcaaaatttggggtatgaca 11053702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 29186292 - 29186343
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  29186292 cgaataaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 29186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 20372927 - 20372978
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  20372927 cgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 20398649 - 20398700
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  20398649 cgaataaaatcggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20398700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 24956860 - 24956911
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  24956860 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 24965323 - 24965374
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  24965323 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24965374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 1728173 - 1728224
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  1728173 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 28843991 - 28843940
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  28843991 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 28852601 - 28852550
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  28852601 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31421840 - 31421789
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||| ||||||||||    
T  31421840 cgaataaaatgggtaagaatagagaaaagtggtcaaaattttgggtatgaca 31421789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 43598060 - 43598111
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  43598060 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 43603552 - 43603603
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  43603552 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 43609044 - 43609095
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  43609044 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 43609095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 19223588 - 19223555
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  19223588 atagagaaaagtggtcaaaatttggggtatgaca 19223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 23350090 - 23350141
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||  |||||||||| |||||||||||||||||||||||    
T  23350090 cgaataaaatgggtaaaaatagagaaaaatggtcaaaatttggggtatgaca 23350141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31410941 - 31410890
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| ||  || ||||||||| ||||||||||||||||||||||||    
T  31410941 cgaataaaatgggttagaatagagaaatgtggtcaaaatttggggtatgaca 31410890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 41099808 - 41099844
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgacacat 66  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  41099808 atagataaaagtggtcaaaatttggggtatggcacat 41099844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 35370 - 35424
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacacat 66  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  35370 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 35424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 17628316 - 17628262
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacacat 66  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  17628316 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacacat 17628262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 2211290 - 2211238
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacac 64  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  2211290 cgaataaaataggtaagaatagagaaaagtggtcaaaatttagggtatgacac 2211238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 28470231 - 28470282
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  28470231 cgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 28470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 50824403 - 50824352
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  50824403 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 50851457 - 50851508
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  50851457 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 50851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 8154658 - 8154709
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  8154658 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 8154709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 9525448 - 9525499
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||| ||||||||||||||||||||    
T  9525448 cgaataaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 9525499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 41006607 - 41006556
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  41006607 cgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41006556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 41015387 - 41015336
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  41015387 cgaataaaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41015336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 14538620 - 14538670
Alignment:
Q  13 gaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||| |  ||| ||||||||||||||||||||||||||||||||||    
T  14538620 gaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 14538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 27341350 - 27341400
Alignment:
Q  13 gaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||| |  ||| ||||||||||||||||||||||||||||||||||    
T  27341350 gaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 27341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 30508 - 30541
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  30508 atagagaaaagtggtcaaaatttggggtatgaca 30541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 8197728 - 8197761
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  8197728 atagagaaaagtggtcaaaatttggggtatgaca 8197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 9555126 - 9555175
Alignment:
Q  16 taaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacaca 65  Q
    |||||| || ||| ||||||||||||| ||||||||||||||||||||||    
T  9555126 taaaatgggtaagaatagagaaaagtgatcaaaatttggggtatgacaca 9555175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 17919232 - 17919199
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  17919232 atagagaaaagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 17933706 - 17933655
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||  |||||||||| |||||||||||||||||||||||    
T  17933706 cgaataaaatgggtaaaaatagagaaaattggtcaaaatttggggtatgaca 17933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 18039041 - 18039011
Alignment:
Q  33 gagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||||||||||||||||||||||||    
T  18039041 gagaaaagtggtcaaaatttggggtatgaca 18039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 6973261 - 6973290
Alignment:
Q  36 aaaagtggtcaaaatttggggtatgacaca 65  Q
    ||||||||||||||||||||||||||||||    
T  6973261 aaaagtggtcaaaatttggggtatgacaca 6973290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 18349589 - 18349552
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgacacatg 67  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  18349589 atagagaaaagttgtcaaaatttggggtatcacacatg 18349552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 13604165 - 13604193
Alignment:
Q  36 aaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||||||||||||||||||||||    
T  13604165 aaaagtggtcaaaatttggggtatgacac 13604193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 31540005 - 31539953
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  31540005 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacac 31539953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31548574 - 31548523
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  31548574 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 35104078 - 35104129
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  35104078 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35104129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 3432904 - 3432955
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  3432904 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 3432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 21498930 - 21498964
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||||||||||||||||||||||||||||    
T  21498930 atagagaaaagtggtcaaaatttggggtatgacac 21498964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 29221502 - 29221553
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||  |||||||||||| |||||||||||||||||||||    
T  29221502 cgaataaaatgggtaaaaatagagaaaagtagtcaaaatttggggtatgaca 29221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 44320227 - 44320257
Alignment:
Q  33 gagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||||||||||||||||||||||||    
T  44320227 gagaaaagtggtcaaaatttggggtatgaca 44320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 20314059 - 20314092
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||| ||||||||||||||||||||||||||||    
T  20314059 atagaaaaaagtggtcaaaatttggggtatgaca 20314092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 28457584 - 28457556
Alignment:
Q  33 gagaaaagtggtcaaaatttggggtatga 61  Q
    |||||||||||||||||||||||||||||    
T  28457584 gagaaaagtggtcaaaatttggggtatga 28457556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 11044 - 10993
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  11044 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 10993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 23515 - 23464
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  23515 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 121279 - 121228
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  121279 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 121228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 12996527 - 12996476
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  12996527 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12996476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 21532318 - 21532369
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  21532318 cgaataaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 21532369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 52295655 - 52295604
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  52295655 cgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 52295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 8094298 - 8094347
Alignment:
Q  14 aataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  8094298 aataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 8094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 8103104 - 8103153
Alignment:
Q  14 aataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  8103104 aataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 8103153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 10638379 - 10638328
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||  ||||||||||||||||||||||||||||||||||    
T  10638379 cgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 10638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 27343705 - 27343756
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||  ||||||||||||||||||||||||||||||||||    
T  27343705 cgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 27343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 12428510 - 12428543
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  12428510 atagagaaaagtggtcaaaatttggggtatgaca 12428543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 4523694 - 4523746
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgacac 64  Q
    |||||||||| |  ||| |||||| ||||||||||||||||||||||||||||    
T  4523694 cgaataaaatggataagaatagaggaaagtggtcaaaatttggggtatgacac 4523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 405 - 441
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgacacat 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  405 atagagaaaagtggtcaaaatttggggtatgacacat 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 33083 - 33035
Alignment:
Q  15 ataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  33083 ataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 33035  T

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Target: scaffold0209 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 98 - 149
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||||||    
T  98 cgaataaaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 149  T

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Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 15864 - 15813
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||  ||||||||||||||||||||||||||||||||||    
T  15864 cgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 15813  T

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Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 40847 - 40898
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| |  ||| ||||||||||||||||||||||||||||||||||    
T  40847 cgaataaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 40898  T

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Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 7648 - 7694
Alignment:
Q  17 aaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||||    
T  7648 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 7694  T

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Target: scaffold0431 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 172 - 139
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  172 atagagaaaagtggtcaaaatttggggtatgaca 139  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 192561 - 192528
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||||||    
T  192561 atagagaaaagtggtcaaaatttggggtatgaca 192528  T

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Target: scaffold0222 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 20518 - 20550
Alignment:
Q  34 agaaaagtggtcaaaatttggggtatgacacat 66  Q
    |||||||||||||||||||||||||||||||||    
T  20518 agaaaagtggtcaaaatttggggtatgacacat 20550  T

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Target: scaffold0173 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 943 - 994
Alignment:
Q  12 cgaataaaataggcaaggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    |||||||||| || ||| |||||||||  |||||||||||||||||||||||    
T  943 cgaataaaatgggtaagaatagagaaagctggtcaaaatttggggtatgaca 994  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 65708 - 65743
Alignment:
Q  28 ggatagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||| ||||||||||    
T  65708 ggatagagaaaagtggtcaaaatttagggtatgaca 65743  T

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Target: scaffold0863 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 408 - 437
Alignment:
Q  34 agaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||||||||||    
T  408 agaaaagtggtcaaaatttggggtatgaca 437  T

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Target: scaffold0170 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 7224 - 7257
Alignment:
Q  32 agagaaaagtggtcaaaatttggggtatgacaca 65  Q
    ||||||||||||||||||||| ||||||||||||    
T  7224 agagaaaagtggtcaaaatttagggtatgacaca 7257  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 81818 - 81851
Alignment:
Q  30 atagagaaaagtggtcaaaatttggggtatgaca 63  Q
    ||||||||||||||||||||||| ||||||||||    
T  81818 atagagaaaagtggtcaaaatttagggtatgaca 81851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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