View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16970_high_5 (Length: 282)
Name: NF16970_high_5
Description: NF16970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16970_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 43693290 - 43693544
Alignment:
| Q |
13 |
aaaataattatctagccacaatggcagtccaccctagaatttgaacatactactaaagaccatcacattcaatggtggtatattattagaatagaaatta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43693290 |
aaaataattatctagccacaatggcagtccaccctagaatttgaaca-actactaaagaccatcacattcaatggtggtatattattagaatagaaatta |
43693388 |
T |
|
| Q |
113 |
atgaaaaacagttatacctagttattaaataaattaaaacgaaagtttacatccggaga---catccttagacaggtggataatttttctgtaatttcat |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
43693389 |
atgaaaaacaattatacctagttattaaataaattaaaacgaaagtttacatccggagacatcatccttggacaggtggataatttttctataatttcat |
43693488 |
T |
|
| Q |
210 |
gctcttgcattccctctgaggagctatccctaacaatgattttcatcacttctaaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43693489 |
gctcttgcattccctctgaggagctatccctaacaatgattttcatcacttctaaa |
43693544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 43684248 - 43684459
Alignment:
| Q |
13 |
aaaataattatctagccacaatggcagtccaccctagaatttgaacatactactaaagaccatcacattcaatggtggtatattattagaatagaaatta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
43684248 |
aaaataattatctagccacaatggcagttcaccctagaatttgaacatgctactaaagaccatcaaattcagtggtgacatattattagaatagaaatta |
43684347 |
T |
|
| Q |
113 |
atgaaaaacagttatacctagttattaaataaattaaaacgaaagtttacatccggagac--atccttagacaggtggataatttttctgtaatttcatg |
210 |
Q |
| |
|
|||||||||| | | | ||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||| ||||||||||||||| |||||| ||| |
|
|
| T |
43684348 |
atgaaaaacaatgagatctagttattaaataaatcaaaacaaaagtttacatccggagacatatccttggacatgtggataatttttctataattttatg |
43684447 |
T |
|
| Q |
211 |
ctcttgcattcc |
222 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
43684448 |
cttttgcattcc |
43684459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 32429304 - 32429372
Alignment:
| Q |
116 |
aaaaacagttatacctagttattaaataaattaaaacgaaagtttacat-ccggagacatccttagaca |
183 |
Q |
| |
|
||||||| | ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
32429304 |
aaaaacaatgatatctagttactaaataaattaaaacgaaagtttacatcccggagacatccttggaca |
32429372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University