View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16970_high_6 (Length: 277)
Name: NF16970_high_6
Description: NF16970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16970_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 34437461 - 34437706
Alignment:
| Q |
22 |
tcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggagatggctataaaccaccatttgaagttattaggaatgctgctacaccaa |
121 |
Q |
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| T |
34437461 |
tcctcttcatggaaatctataagcacttcttcaaaaatagatgttagtggagatggctataaaccaccatttgaagttattaggaatgctgctacaccaa |
34437560 |
T |
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| Q |
122 |
ggaatgagaatgatagtttggaattttcttggatttcagatgatccaaatttgaaattcaatatctacttgtactttgcagaagtggagaaacttaacaa |
221 |
Q |
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| T |
34437561 |
ggaatgagaatgatagtttggaattttcttggatttcagatgatcgaaatttgaaattcaatgtctacttgtactttgcagaagtggagaaacttaacaa |
34437660 |
T |
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| Q |
222 |
aactcaattgagagaattcaacgtatcttggaatggttctcctttg |
267 |
Q |
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| T |
34437661 |
aactcagttgagagaattcgacgtatcttggaatggttctcctttg |
34437706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 34444205 - 34444453
Alignment:
| Q |
19 |
aattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggagatggctataaaccaccatttgaagttattaggaatgctgctacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
34444205 |
aattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggagatggctataaagcaccgtttgaagttattagcaatgctgctacac |
34444304 |
T |
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| Q |
119 |
caaggaatgagaatgatagtttggaattttcttggatttcagatgatccaaatttgaaattcaatatctacttgtactttgcagaagtggagaaacttaa |
218 |
Q |
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| T |
34444305 |
caaggaatgagaatgttagtttggatttttcttggatttcagatgatccaaatttgaaattcaatgtctacttgtactttgctgaatttgagaaacttaa |
34444404 |
T |
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| Q |
219 |
caaaactcaattgagagaattcaacgtatcttggaatggttctcctttg |
267 |
Q |
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||||||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
34444405 |
caaaactcagttgagaaaattcaatgtatcttggaatggttctcctttg |
34444453 |
T |
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