View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16970_low_11 (Length: 234)
Name: NF16970_low_11
Description: NF16970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16970_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 5847333 - 5847524
Alignment:
| Q |
24 |
atcaagtcatcgtagagtatatctgaacgaagagagttatagagacctaataatgtttgtcgtgtgtgaatatgaccagaaattcttatgaactgttcca |
123 |
Q |
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| T |
5847333 |
atcaagtcatcgtagagtatatctcaacgaagagagtta--gagacctaataatgtttgtcgtgtgtgaatatgaccagaaattcttatgaactgttcca |
5847430 |
T |
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| Q |
124 |
tagagacaaaacaactaaacggctgatcctcgtgtactcttcacattcacaatctcccaatctttcaattcaatgaatttagcagagacagtac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5847431 |
tagagacaaaacaactaaacggctgatcctcgtgtactcttcacattcacaatctcccaatcttccaattcaatgaatttagcagagacagtac |
5847524 |
T |
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