View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16970_low_2 (Length: 473)
Name: NF16970_low_2
Description: NF16970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16970_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 2805711 - 2805262
Alignment:
| Q |
19 |
gcctcaactcaatttacctaagtggaatcgactcgtaatatcaaatgattttgcctaaaatttcagaactattatacgcaatattcaaaccacatacatt |
118 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2805711 |
gcctcaactcaatttacctaagtggaatcggctggtaatatcaagtgactttgcctaaaatttcagaattattatacgcaatattcaaaccacatacatt |
2805612 |
T |
|
| Q |
119 |
ttattacagactaaaatgtagtaccactgaaacactaatttagttctacatctttagtgaagtgtagtatatatgctaaaacttatataaaagagaaaga |
218 |
Q |
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|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2805611 |
ttgtcacagactaaaatgtagtaccactgaaccactaatttagttctacatctttagtgaagtgtagtatatatgct-aaacttatataaaagagaaaga |
2805513 |
T |
|
| Q |
219 |
aatagtatatatgctaaatatttggcccctcaagaaattcctccaagcactgtcacttaatgagtgtcactcannnnnnnctcgtaggttcccttgagac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2805512 |
aatagtatatatgctaaatatttggcccctcaagaaattcctccaagcactgtcacttaatgagtgtcactca-ttttttctcgtaggttcccttgagac |
2805414 |
T |
|
| Q |
319 |
aataaatatgatcacatctcttagcaaaaattcgcaacgttgttgtgagagttagagaaatacttata-ttttttcctatggtgaaattaataaaatgct |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2805413 |
aataaatatgatcacatctcttagcaaaaattcacaacgttgttgtgagagttagagaaatacttatatttttttcctatggtgaaattaataaaatgct |
2805314 |
T |
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| Q |
418 |
tggtagaatttcttaatgtattaaataaatttttgtatacagtattatttac |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2805313 |
tggtagaatttcttaatgtattaaataaatttttgtatacagtattatttac |
2805262 |
T |
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