View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16970_low_4 (Length: 390)
Name: NF16970_low_4
Description: NF16970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16970_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 6773391 - 6773745
Alignment:
| Q |
16 |
aatataatgatttggttctaatgcctaaaagaatgaatactcctgatcatagaattaggtgtaaagcatctgattagaattagggtggattatcctaact |
115 |
Q |
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| T |
6773391 |
aatataatgatttggttccaatgcctaaaagaatgaatgctcctgatcatagaattaggtgtaaagcatctgattagaattaggatggattatcctaact |
6773490 |
T |
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| Q |
116 |
aactgccaactagttggaactagtgagtatgtttctgctatcttcttatttgaaacaaagggtcttgctaagggcattgtttgcattttccttaaaacaa |
215 |
Q |
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| T |
6773491 |
aactgccaactagttggaactagtgattatgtttctgctatcttcttatttgaaacaaagggtcttgctaagggcattgtttgcattttccttaaaacaa |
6773590 |
T |
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| Q |
216 |
tggctagattttgtatgtgattatatgctctcttgacacagatcaacacccctggctaattgtttggatgagctgttaggaaaaattttggtggcactgt |
315 |
Q |
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| T |
6773591 |
tggctagattttgtatgtgattatatgctctcttgaaaccgatcaacacccctggctaattgtttggatgagctgttaggaaaaatttcggtggcactgt |
6773690 |
T |
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| Q |
316 |
catgttattcaagttctgttcatctttgatttcgcgttaaaatttattgtcaaaat |
371 |
Q |
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| T |
6773691 |
catgttattcaagttctgttcatctttgatttcgcgtt-aaatttattgtcaaaat |
6773745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 6769421 - 6769557
Alignment:
| Q |
207 |
ttaaaacaatggctagattttgtatgtgattatatgctctcttgacacagatcaacacccctggctaattgtttggatgagctgttag---gaaaaattt |
303 |
Q |
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| T |
6769421 |
ttaaaacaatggtcagattttgtatttgattat--gctctcttgacatagatcaacactccaggcaaatt-tttggatgagctgttagttacgaattttt |
6769517 |
T |
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| Q |
304 |
tggtggcactgtcatgttattcaagttctgttcatctttg |
343 |
Q |
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| T |
6769518 |
tggtggcactgtgatgttattcaagctctgttcatctttg |
6769557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 6769284 - 6769367
Alignment:
| Q |
16 |
aatataatgatttggttctaatgcctaaaagaatgaatactcctgatcatagaattaggtgtaaagcatctgattagaattagg |
99 |
Q |
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| T |
6769284 |
aatataatgattaggatccaaggcctaaaagaatgggtgctgctgatcattgaattaggtgcaaagtatctgattagaattagg |
6769367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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