View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16970_low_5 (Length: 365)
Name: NF16970_low_5
Description: NF16970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16970_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 41760904 - 41761251
Alignment:
| Q |
1 |
ccattaaattttgcaaagatttcagatattaacaaagagcaagtttccatgccaaatttctttttaattaagttatagccttactctaagcatattttat |
100 |
Q |
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| T |
41760904 |
ccattaaattttgcaaagatttcagatattaacaaagagcaagtttccatgccaaatttctttttaattaagttatagccttactctaagcatattttat |
41761003 |
T |
|
| Q |
101 |
gaaccaaattttgtttnnnnnnnnnnnnnnnnnnnnnnnttattagtaattagagtgccattgataatcataactcacctcatttgaggtaacaaaatca |
200 |
Q |
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| T |
41761004 |
gaaccaaattttgtttaaaaaaaataggaaaaggaaaaattattagtaattagagtgccattgataatcataactcacctcatttgaggtaacaaaatca |
41761103 |
T |
|
| Q |
201 |
tattcttatgactgagttcacacatcatggatatgaaccaacttaccaagtaattttgagccaattatcttaagtatttgattacttttttggtgacact |
300 |
Q |
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| T |
41761104 |
tattcttatgactgagttcacacatcatggatatgaaccaacttaccaagtaattttgagccaattatcttaagtatttgattacttttttggtgacact |
41761203 |
T |
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| Q |
301 |
ctaagcatttgatttgatcactatgatattgaagtaaacaatactaat |
348 |
Q |
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| T |
41761204 |
ctaagcatttgatttgatcactatgatattgaagtaaacaatactaat |
41761251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41795681 - 41795746
Alignment:
| Q |
1 |
ccattaaattttgcaaagatttcag-atattaacaaagagcaagtttccatgccaaatttcttttt |
65 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
41795681 |
ccattaaattttgcaaagatttccccatattaacaaagagcaagtttacatgccaaatttcttttt |
41795746 |
T |
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