View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16971_low_1 (Length: 752)

Name: NF16971_low_1
Description: NF16971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16971_low_1
NF16971_low_1
[»] chr5 (10 HSPs)
chr5 (289-474)||(37326134-37326321)
chr5 (471-715)||(37325177-37325415)
chr5 (134-211)||(37440376-37440453)
chr5 (97-207)||(37226757-37226867)
chr5 (134-207)||(37221321-37221394)
chr5 (141-208)||(37387066-37387133)
chr5 (213-286)||(37326374-37326448)
chr5 (305-363)||(32117738-32117797)
chr5 (134-184)||(37195845-37195895)
chr5 (388-443)||(14373004-14373058)
[»] chr2 (1 HSPs)
chr2 (386-433)||(10931685-10931732)
[»] chr8 (1 HSPs)
chr8 (388-434)||(30284542-30284588)
[»] chr6 (4 HSPs)
chr6 (289-362)||(4433089-4433163)
chr6 (309-349)||(6300574-6300615)
chr6 (309-349)||(6307384-6307425)
chr6 (294-369)||(22690008-22690087)
[»] chr4 (1 HSPs)
chr4 (290-346)||(5912661-5912718)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 289 - 474
Target Start/End: Complemental strand, 37326321 - 37326134
Alignment:
Q  289 catatacgaacatcaaaatgattcaagattcaaatcataaatc-aatgacaaaagaaaattggctagctatacaaatatgac-nnnnnnnngtggccacc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         ||||| ||     
T  37326321 catatacgaacatcaaaatgattcaagattcaaatcataaatcaaatgacaaaagaaaattggctagctatacaaatatgacaaaaaaaaagtggcaaca 37326222  T
Q  387 aacacttagtttaggtagtgattcattacaattaatcatgattcatcaaagtaaatctataatgaatctggattttagatgatattca 474  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| |||||||||  |||||||||||||||||||    
T  37326221 aacacttagttgaggtagtgattcattacaattaatcatgattcatcgtagtaaatcaataatgaattgggattttagatgatattca 37326134  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 471 - 715
Target Start/End: Complemental strand, 37325415 - 37325177
Alignment:
Q  471 ttcaaattttcatctgcctcttaatatttgtttatattttcttataaacggaaatgccgagcttgcttatttaagatatattaatctacccaagtctcta 570  Q
    |||||| |||||||||| |||||||||||    |||||||||||||||||||||||  || |||||| ||||||||||||||||||||| ||||||||||    
T  37325415 ttcaaaatttcatctgcatcttaatattt----atattttcttataaacggaaatgttgaacttgctcatttaagatatattaatctactcaagtctcta 37325320  T
Q  571 attcaataggttttgatcagcaggaactgcaatctccataagtaaaatctgatacctaaacttttgacatttgttttatagtatacagaaaaattgataa 670  Q
    ||||| |||||||||| ||||||||||||||||||| |||||     || ||| |||||||||| |||||||||||||| |||| |||||||||| ||||    
T  37325319 attcagtaggttttgaccagcaggaactgcaatctcaataag---gttcagatgcctaaactttcgacatttgttttattgtatgcagaaaaatttataa 37325223  T
Q  671 ctcacatccccatgatttagaga-aaaatggagaaaagaggatatc 715  Q
    |||| |||||| | |||| |||| ||||| || |||||||||||||    
T  37325222 ctcatatccccgtaatttggagagaaaattgaaaaaagaggatatc 37325177  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 37440376 - 37440453
Alignment:
Q  134 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttcagcc 211  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37440376 aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacgtttctgtacgagcttcagcc 37440453  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 37226757 - 37226867
Alignment:
Q  97 acacaataccaactgttgatagtgtcgaagcctctcaaagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttct 196  Q
    ||||||||| ||  |||||||||||| ||| || |  |||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  37226757 acacaatactaagcgttgatagtgtccaagtctatacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttct 37226856  T
Q  197 gtacgagcttc 207  Q
     ||| ||||||    
T  37226857 ctacaagcttc 37226867  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 37221321 - 37221394
Alignment:
Q  134 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttc 207  Q
    |||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  37221321 aagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttc 37221394  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 37387133 - 37387066
Alignment:
Q  141 aatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttca 208  Q
    |||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||    
T  37387133 aatgttccattcccttgtgattgcattaatgacgagtttcttggtcacacgtttttgtacgagtttca 37387066  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 37326448 - 37326374
Alignment:
Q  213 attcaggttgaaattcataagacatttttcaaatcaattcgaatctt-ctatgaatcgtaagatgattaccaata 286  Q
    |||||||||| || ||||||||||||||| |||||||||  |||||| ||||||||| ||| |||||||||||||    
T  37326448 attcaggttgtaactcataagacattttttaaatcaatttaaatcttactatgaatcataaaatgattaccaata 37326374  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 32117797 - 32117738
Alignment:
Q  305 aatgattcaagattcaaatcataaatc-aatgacaaaagaaaattggctagctatacaaa 363  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| || || ||||||||||    
T  32117797 aatgattcaagattcaagtcataaatcaaatgacaaaagaaaagtgtctggctatacaaa 32117738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 37195845 - 37195895
Alignment:
Q  134 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttgg 184  Q
    |||||| |||||| |||||||||||||||||||| |||||||| |||||||    
T  37195845 aagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 37195895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 14373058 - 14373004
Alignment:
Q  388 acacttagtttaggtagtgattcattacaattaatcatgattcatcaaagtaaatc 443  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  14373058 acactaagtttaggtagtgattcatta-aatgaatcatgattcatcacagtcaatc 14373004  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 10931685 - 10931732
Alignment:
Q  386 caacacttagtttaggtagtgattcattacaattaatcatgattcatc 433  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  10931685 caacactaagtttaggtagtgattcattacaattaatcgagattcatc 10931732  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 30284542 - 30284588
Alignment:
Q  388 acacttagtttaggtagtgattcattacaattaatcatgattcatca 434  Q
    ||||| ||||||| || |||||||||||||| |||||||||||||||    
T  30284542 acactaagtttagataatgattcattacaatgaatcatgattcatca 30284588  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 4433089 - 4433163
Alignment:
Q  289 catatacgaacatcaaaatgattcaagattcaaatcataaatc-aatgacaaaagaaaattggctagctatacaa 362  Q
    |||||| |||| ||||||| ||||||||||||| ||||||||| ||| ||||| ||||| | |||||| ||||||    
T  4433089 catatatgaacctcaaaataattcaagattcaagtcataaatcaaatcacaaacgaaaagtagctagcaatacaa 4433163  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 6300615 - 6300574
Alignment:
Q  309 attcaagattcaaatcataaatc-aatgacaaaagaaaattg 349  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  6300615 attcaagattcaaatcataaatcaaatgacataagaaaattg 6300574  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 6307425 - 6307384
Alignment:
Q  309 attcaagattcaaatcataaatc-aatgacaaaagaaaattg 349  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  6307425 attcaagattcaaatcataaatcaaatgacataagaaaattg 6307384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 22690087 - 22690008
Alignment:
Q  294 acgaacatcaaaatgattcaagattcaa---atcataaatc-aatgacaaaagaaaattggctagctatacaaatatgac 369  Q
    ||||||||||||||  ||||||||||||   || ||||||| ||||||||||||||| ||| || |||||||||| ||||    
T  22690087 acgaacatcaaaatatttcaagattcaagtcataataaatcaaatgacaaaagaaaaatggttaactatacaaatttgac 22690008  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 5912718 - 5912661
Alignment:
Q  290 atatacgaacatcaaaatgattcaagattcaaatcataaatc-aatgacaaaagaaaa 346  Q
    ||||| |||| ||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  5912718 atatatgaacctcaaaataattcaagattcaaattatatatcaaatgacaaaagaaaa 5912661  T

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