View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16971_low_5 (Length: 221)
Name: NF16971_low_5
Description: NF16971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16971_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 40856740 - 40856920
Alignment:
| Q |
25 |
taacaaactggttgaattagcttatcaaaataagttataagctcgtaaggaaaatgttaccaaagctacatgagcttgaaatgtgacattgccaaacaaa |
124 |
Q |
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| T |
40856740 |
taacaagctggttgaattagcttatccaaataagttataagctcgtaaggaaaatgttaccaaagctacatgagcttgaaatgtgacattgccaaacaaa |
40856839 |
T |
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| Q |
125 |
atctcttgaatttggacataagttgttgttagctggttatgcaaagattaaagttatcatcgtgtttttatggaatgccta |
205 |
Q |
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| T |
40856840 |
atctctagaatttggacataagttgttgttagctggttatgcaaagattaaagttatcatcgtgtttttatggaatgccta |
40856920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 36021117 - 36021081
Alignment:
| Q |
36 |
ttgaattagcttatcaaaataagttataagctcgtaa |
72 |
Q |
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| T |
36021117 |
ttgaattagcttatcaaaataagttataagctagtaa |
36021081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 2103358 - 2103392
Alignment:
| Q |
36 |
ttgaattagcttatcaaaataagttataagctcgt |
70 |
Q |
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| T |
2103358 |
ttgaattagcttatcaaaataggttataagctcgt |
2103392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 29234713 - 29234677
Alignment:
| Q |
36 |
ttgaattagcttatcaaaataagttataagctcgtaa |
72 |
Q |
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| T |
29234713 |
ttgaattagcttatcgaaataagttataagctagtaa |
29234677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 19461826 - 19461862
Alignment:
| Q |
36 |
ttgaattagcttatcaaaataagttataagctcgtaa |
72 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |
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| T |
19461826 |
ttgaattagcttatcaaattaagttataagctagtaa |
19461862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 22838160 - 22838124
Alignment:
| Q |
36 |
ttgaattagcttatcaaaataagttataagctcgtaa |
72 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |
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|
| T |
22838160 |
ttgaattagcttatcaaattaagttataagctagtaa |
22838124 |
T |
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