View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16972_high_4 (Length: 300)

Name: NF16972_high_4
Description: NF16972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16972_high_4
NF16972_high_4
[»] chr3 (1 HSPs)
chr3 (16-300)||(7352769-7353053)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 7353053 - 7352769
Alignment:
Q  16 acttcaaccattaatgattcaagtttgatttctttaccaccaatccctccagcttgattctccatcgtcacaaaacgaccactaatggcatcatcttcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7353053 acttcaaccattaatgattcaagtttgatttctttaccaccaatccctccagcttgattctccatcgtcacaaaacgaccactaatggcatcatcttcat 7352954  T
Q  116 ccatgttcatgtttctgcaaacatcatatgtatttattaacaagtaactaatgcatgatattttattggtaactctttattacgaataccccttttccat 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352953 ccatgttcatgtttctgtaaacatcatatgtatttattaacaagtaactaatgcatgatattttattggtaactctttattacgaataccccttttccat 7352854  T
Q  216 aatnnnnnnntatatgttagtataaaacaaactgttacctggcattagttagatcattcactcctgggatcaaattttcattgat 300  Q
    |||       ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||| ||||    
T  7352853 aataaaaaaatatctgttagtataaaacaaagtgttacctggcatcagatagatcattcactcctgtgatcaaattttcactgat 7352769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University