View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16972_high_5 (Length: 212)
Name: NF16972_high_5
Description: NF16972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16972_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 17779365 - 17779559
Alignment:
| Q |
18 |
atgcttggtgactttagcaagacatgtgatgaggttacaactacaaatttcatgaatggtgggttgcaagagcaatttagtgactactcattaccatttg |
117 |
Q |
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| T |
17779365 |
atgcttggtgactttagcaagacatgtgatgaggttacaactacaaatttcatgaatggtgggttgcaagagcaatttagtgactactcattaccatttg |
17779464 |
T |
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| Q |
118 |
gtaattaccaatatgataataatgcattggttaaggtaccttataatgttaatgtgaatgtgcctcgtattgatgaacaagaattgatgaatttc |
212 |
Q |
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| T |
17779465 |
gtaattaccaatatgataataatgcattggttaaggtaccttataatgttaatatgaatgtgcctcgtattgatgaacaagaattgatgaatttc |
17779559 |
T |
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