View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16972_low_1 (Length: 431)
Name: NF16972_low_1
Description: NF16972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16972_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 16158675 - 16158275
Alignment:
| Q |
13 |
catcaacaatttaatttcattcaacaaagcccaaacacactaacattcagagagaaaatatgataacatccttatttaccaactaaatagtcataatcgt |
112 |
Q |
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| T |
16158675 |
catcagcaatttaatttcattcaagaaaacacaaacacaataacattcagagagaaagtatggaaacatgcttatttaccaactaaatagtcataatcgt |
16158576 |
T |
|
| Q |
113 |
aggtatgagcacaaacatcagcaagcttggtcaaagaaacaccatatttaggaatggtgaagccttcggagacctgaaccttggttatcatctggaagat |
212 |
Q |
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|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
16158575 |
aggtatgagcgcaaacatcaacaagtttggtcaaagaaacaccatatttaggaatggtgaagctttcggagacctgaaccttggttgtcatctggaagat |
16158476 |
T |
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| Q |
213 |
aatcttatatgggtgttgtgtagtacgataagagccagcacttggagcaacagaaaaacatgataggttgtagaccttcccctcacttaatttggattgg |
312 |
Q |
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||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
16158475 |
aatcttatatgggtgttgtgtggtacggtatgagccagcacttggagcaacagaaaaacatgataggttgtagaccttcccctcacttaatctggactgg |
16158376 |
T |
|
| Q |
313 |
aaaacatatagcaactgcttccttacactggcatgaatcttggatcccttcacatttaaaacagcaaaataacaaaatttaggtcatggttcatactgca |
412 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||| || |
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| T |
16158375 |
aaaacatatagcaactgcttccttacactggtatgaatcttggatcccttcacatttaaaacaacacaataacaaaa-ttaggtcatggttgatactaca |
16158277 |
T |
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| Q |
413 |
tc |
414 |
Q |
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| T |
16158276 |
tc |
16158275 |
T |
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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 187 - 355
Target Start/End: Complemental strand, 33436583 - 33436415
Alignment:
| Q |
187 |
tgaaccttggttatcatctggaagataatcttatatgggtgttgtgtagtacgataagagccagcacttggagcaacagaaaaacatgataggttgtaga |
286 |
Q |
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|||||||||||| |||||||||| | |||||| ||||||||| | || || |||||||| ||| |||||||||||||||| ||||| || | | |||| |
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| T |
33436583 |
tgaaccttggttgtcatctggaaaacaatcttgtatgggtgtagggtggtgcgataagaaccaacacttggagcaacagagaaacaggacatctcataga |
33436484 |
T |
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| Q |
287 |
ccttcccctcacttaatttggattggaaaacatatagcaactgcttccttacactggcatgaatcttgg |
355 |
Q |
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| T |
33436483 |
cctttccctcgctcaacttgctttggaaaacataaaaaagttgcttcctcacactggcatggatcttgg |
33436415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 355
Target Start/End: Original strand, 33615110 - 33615281
Alignment:
| Q |
184 |
acctgaaccttggttatcatctggaagataatcttatatgggtgttgtgtagtacgataagagccagcacttggagcaacagaaaaacatgataggttgt |
283 |
Q |
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||||||||||||||| |||| ||||| | |||||| ||||||||| || || |||||||| ||| |||||||||||||||| |||||||| | | | |
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| T |
33615110 |
acctgaaccttggttgtcatttggaaaacaatcttgtatgggtgtgaggtggtgcgataagaaccaacacttggagcaacagagaaacatgacatctgat |
33615209 |
T |
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| Q |
284 |
agaccttcccctcacttaatttggattggaaaacatatagcaactgcttccttacactggcatgaatcttgg |
355 |
Q |
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| T |
33615210 |
aaacctttccctcgctcaacttgctttggaaaacataaagaagctgcttcctcacaccggcatggatcttgg |
33615281 |
T |
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