View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16972_low_3 (Length: 305)
Name: NF16972_low_3
Description: NF16972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16972_low_3 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (2 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 4627695 - 4627419
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627695 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttgtcaacactg |
4627596 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627595 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
4627496 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4627495 |
agaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttcagccctttg |
4627419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 4258759 - 4259035
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||| | |||||| || |||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
4258759 |
gtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttgtcaacactg |
4258858 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || | ||||||| | || ||| | |
|
|
| T |
4258859 |
aatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaagatggtctgactccagt |
4258958 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
295 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4258959 |
ggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaagaacttccttcagccctttg |
4259035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 4594555 - 4594280
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||||||| | ||| |||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4594555 |
gtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttgtcaacactg |
4594456 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| ||||||||||||||| |||||||| | |
|
|
| T |
4594455 |
aatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatggtctaacaccaat |
4594356 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt |
294 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
4594355 |
ggaaggtgatggtgatgttagtcaagacataccctctcttgctcaatctataagaaagaatttccttaaacccttt |
4594280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 4517877 - 4517626
Alignment:
| Q |
27 |
tccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactgaatacaat |
126 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4517877 |
tccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaat |
4517778 |
T |
|
| Q |
127 |
cacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtg |
226 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| || |||||||||||||| || ||||||| | |
|
|
| T |
4517777 |
cacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgatagaaggcg |
4517678 |
T |
|
| Q |
227 |
atggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa |
278 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
4517677 |
atggtgatgttagtcaagacattatctctctttccgattcaataagaaagaa |
4517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 4618842 - 4618580
Alignment:
| Q |
23 |
tgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactgaata |
122 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4618842 |
tgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaata |
4618743 |
T |
|
| Q |
123 |
caatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaa |
222 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| || |||||||||||| || |||| |||||||| ||| |||||||||||||||||| | ||| |
|
|
| T |
4618742 |
caatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatggtttaacaccaatggaa |
4618643 |
T |
|
| Q |
223 |
ggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcctt |
285 |
Q |
| |
|
|||||||| ||||||| |||||| |||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
4618642 |
ggtgatggtgatgttagtcaagatgtaccaactctttgtcaatcagtaagaaagaacttcctt |
4618580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 4576002 - 4575761
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||| ||||||||| | |||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4576002 |
cagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttgttaacac |
4575903 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
4575902 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtttaactcca |
4575803 |
T |
|
| Q |
217 |
ctagaaggtgatggcgatgttactcaagacataccctctctt |
258 |
Q |
| |
|
|| ||| |||| ||||| | ||||||| ||| ||||||| |
|
|
| T |
4575802 |
aaggatggtaatggtgatgtaagtcaagacctacactctctt |
4575761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 4558670 - 4558405
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
4558670 |
gtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaacactg |
4558571 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||| || || ||||||||||| ||| |
|
|
| T |
4558570 |
aatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattccggatggtttaactccaac |
4558471 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct |
284 |
Q |
| |
|
|| |||||||||||||||| ||||||||| | |||||| | ||||||| |||||||||||||| |
|
|
| T |
4558470 |
ggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcct |
4558405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 3173550 - 3173298
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
||||||| | ||||| |||| ||||||||||||||||| ||||||||| |||||||||| | |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
3173550 |
cagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacctttgtaaacac |
3173451 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacacca |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| || |
|
|
| T |
3173450 |
tgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatggtttaacttca |
3173351 |
T |
|
| Q |
217 |
ctagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaat |
269 |
Q |
| |
|
| ||||||||||| ||||||| ||||||| ||| | |||||| || |||||| |
|
|
| T |
3173350 |
atggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaat |
3173298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 4623852 - 4623593
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||| ||| |||| ||||||| ||||||||||||||||| | ||||||||| ||||| |||||| |||||||||||||||||||| |||| | |
|
|
| T |
4623852 |
gtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttggtcacaccg |
4623753 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||| |||||||||||| |||||||||||||||||| | |
|
|
| T |
4623752 |
aatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattccagatggtttaacaccaat |
4623653 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa |
278 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
4623652 |
ggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaagaa |
4623593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 4488789 - 4489006
Alignment:
| Q |
28 |
ccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatc |
127 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4488789 |
ccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatc |
4488888 |
T |
|
| Q |
128 |
acaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtga |
227 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| || |||||||||||||| ||| ||| ||||| |
|
|
| T |
4488889 |
acaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattccagatggtttaactccaacagatggtga |
4488988 |
T |
|
| Q |
228 |
tggcgatgttactcaaga |
245 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
4488989 |
tggcgatgttagtcaaga |
4489006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 4507456 - 4507237
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||| | |||||| || ||||||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
4507456 |
gtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttgttaacaccg |
4507357 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||| | |
|
|
| T |
4507356 |
aatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctaccagatggtttaactccaat |
4507257 |
T |
|
| Q |
219 |
agaaggtgatggcgatgtta |
238 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
4507256 |
ggatggtgatggtgatgtta |
4507237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 4482412 - 4482160
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||||||||| | ||| |||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4482412 |
cagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataacctttgtcaacac |
4482313 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacacca |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
4482312 |
cgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgataccagatggtttaactcca |
4482213 |
T |
|
| Q |
217 |
ctagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaat |
269 |
Q |
| |
|
| |||||||||| || || | ||||||| || ||||||| |||||||||| |
|
|
| T |
4482212 |
attgaaggtgatgatgaagtaagtcaagacttattctctcttactcaatcaat |
4482160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 4581561 - 4581294
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| |||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581561 |
cagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacac |
4581462 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacacca |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||| || |||||||||||| ||||||||||||||||| || |||||||||||||| || |
|
|
| T |
4581461 |
cgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattccagatggtttaactccg |
4581362 |
T |
|
| Q |
217 |
ctagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct |
284 |
Q |
| |
|
||||||| ||| | ||||||| |||||||||| |||| | | ||||||| |||||||||||||| |
|
|
| T |
4581361 |
atagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaagaacttcct |
4581294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 4603655 - 4603380
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
4603655 |
gtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccg |
4603556 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || || ||| |||||||| |||||| || || |||||||| ||||||| | |
|
|
| T |
4603555 |
aatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatcccagatggactaacaccgat |
4603456 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt |
294 |
Q |
| |
|
|||||||||| |||||| |||||| |||| ||| |||||||||| ||||||||||| |||||| | |||||| |
|
|
| T |
4603455 |
ggaaggtgatgataatgttagtcaagatgtaccttctatttctcaatctataagaaagaatttccttaaacccttt |
4603380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 4565574 - 4565308
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| ||||||||||| | ||| |||||| |||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4565574 |
gtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttgtcaacactg |
4565475 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||| ||||||||| ||||||| | || |||| |||||| ||||||||||||||| ||||||| | |
|
|
| T |
4565474 |
aatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaaccataccagatggtctaacaccgat |
4565375 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcctt |
285 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| |||||| ||||||| |||||||| || |||||| |
|
|
| T |
4565374 |
agaaggtgatggtgatgttagtcaagatgtaccttctcttgctcaatctataagaaaaaatttcctt |
4565308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 4562199 - 4561968
Alignment:
| Q |
27 |
tccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataa-cctttgtcaacactgaatacaa |
125 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||||||| | |||||||| | |||||||| |||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4562199 |
tccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaa |
4562100 |
T |
|
| Q |
126 |
tcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggt |
225 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| ||| || ||| |
|
|
| T |
4562099 |
tcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggt |
4562001 |
T |
|
| Q |
226 |
gatggcgatgttactcaagacataccctctctt |
258 |
Q |
| |
|
||||| ||| ||| ||||||| ||| ||||||| |
|
|
| T |
4562000 |
gatggtgatattagtcaagacctacactctctt |
4561968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 4569607 - 4569360
Alignment:
| Q |
27 |
tccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactgaatacaat |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
4569607 |
tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aat |
4569512 |
T |
|
| Q |
127 |
cacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtg |
226 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
4569511 |
cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaactccgacagaaggtt |
4569412 |
T |
|
| Q |
227 |
atggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa |
278 |
Q |
| |
|
|||| ||| ||| |||||| || ||||||| | | |||||||||||||| |
|
|
| T |
4569411 |
atggtgatattagtcaagaaattgtctctcttgatgattcaataagaaagaa |
4569360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 4572511 - 4572282
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||| || |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
4572511 |
gtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactg |
4572412 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||||| |||||||| || |||||||||||| | ||| |
|
|
| T |
4572411 |
aatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgagagtattccagatggtttatctccaac |
4572312 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacat |
248 |
Q |
| |
|
|| || ||||||||||||| ||||||||| |
|
|
| T |
4572311 |
ggatggcgatggcgatgttagtcaagacat |
4572282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 4587177 - 4586912
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||| || |||| |||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
4587177 |
gtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactg |
4587078 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||| | |||||||||||||| ||| |||||||| ||||||||| || |||||||||||||| ||| |
|
|
| T |
4587077 |
aatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggtttaactccaac |
4586978 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct |
284 |
Q |
| |
|
|| |||||||| ||||||| ||||||||| | |||||| | ||||||| |||||||||||||| |
|
|
| T |
4586977 |
ggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcct |
4586912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 4265640 - 4265916
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| ||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4265640 |
gtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttgtcaacactg |
4265739 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| | ||||||||||| ||| |||| ||||||||||||||||||||| |||| ||| | |
|
|
| T |
4265740 |
aatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatggtctaactccaat |
4265839 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
295 |
Q |
| |
|
||||| |||| |||| ||||||||||||| | ||||| |||||||| | | |||||||||||| ||||||| |
|
|
| T |
4265840 |
ggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcaaccctttg |
4265916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 4612299 - 4612489
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
4612299 |
cagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcgtcaacac |
4612398 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggt |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
4612399 |
cgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgaggctataccagatggt |
4612489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 4502943 - 4503103
Alignment:
| Q |
86 |
ttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttac |
185 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
186 |
ctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagac |
246 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||||| ||||||| ||||||| |
|
|
| T |
4503043 |
ctttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaagac |
4503103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 4513562 - 4513755
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||| | | |||||||| | |||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
4513562 |
gtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttgttaacaccg |
4513661 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||| || || ||||||||||| |
|
|
| T |
4513662 |
aatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggtttaac |
4513755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 4471456 - 4471269
Alignment:
| Q |
22 |
ttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactgaat |
121 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4471456 |
ttgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaat |
4471357 |
T |
|
| Q |
122 |
acaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
209 |
Q |
| |
|
||||||||||| |||||||| ||||||||| || | ||||||||||| ||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
4471356 |
acaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatggttt |
4471269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 4462752 - 4462562
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||||||| ||||| |||| | |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4462752 |
gtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttgtcaacactg |
4462653 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
209 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||| ||| | | ||||||||| ||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
4462652 |
aatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattccaaatggttt |
4462562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 4599710 - 4599443
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
|||| ||||||||||| ||| ||||||| ||||||||| ||| | | ||||||||| |||||||||||||||| ||| |||||||||| || ||||| |
|
|
| T |
4599710 |
cagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacac |
4599611 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacacca |
216 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||| ||| | | |||||||| ||||||| |||| ||||| || |||||||||||||| ||| |
|
|
| T |
4599610 |
cgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagactattccagatggtttaactcca |
4599511 |
T |
|
| Q |
217 |
ctagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct |
284 |
Q |
| |
|
|||| |||||||| |||||||| || |||||| ||||| | | ||||||| ||||| |||||||| |
|
|
| T |
4599510 |
atagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaataacttcct |
4599443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 295
Target Start/End: Original strand, 4298172 - 4298357
Alignment:
| Q |
110 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
209 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||| ||| ||| || |||||||||||| | |||| ||||||||| || ||||||||| | |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct |
4298271 |
T |
|
| Q |
210 |
aacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
295 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4298272 |
gactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttg |
4298357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 4255404 - 4255545
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||| || | |||||||||||| ||||| |||| ||||||| |||||||| | |
|
|
| T |
4255404 |
gtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt------------gtcaacaccg |
4255491 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtt |
172 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
4255492 |
aatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 4497826 - 4497899
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttaga |
90 |
Q |
| |
|
||||||| | |||||||||| || |||||||||||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
4497826 |
cagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga |
4497899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 4483534 - 4483568
Alignment:
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
4483568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 4496222 - 4496189
Alignment:
| Q |
120 |
atacaatcacaaacgtttgctcaaatcaagaggt |
153 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
4496222 |
atacaatgacaaacgtttgctcaaatcaagaggt |
4496189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 1282978 - 1282712
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
1282978 |
gtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttgttaatactg |
1282879 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| | ||||||||| |||||||| |||||| ||||| ||||||||| ||||| |||| |
|
|
| T |
1282878 |
aatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatggtctaacatcact |
1282779 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcctt |
285 |
Q |
| |
|
|||||||||||| ||||||| |||| | |||| ||||||| |||||| ||||||||||| |||||| |
|
|
| T |
1282778 |
agaaggtgatggtgatgttagtcaacatgtaccttctctttgtcaatctataagaaagaatttcctt |
1282712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 35776316 - 35776272
Alignment:
| Q |
94 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
138 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35776316 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35776272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 35842123 - 35842079
Alignment:
| Q |
94 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
138 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35842123 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35842079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 35854631 - 35854587
Alignment:
| Q |
94 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
138 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35854631 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35854587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 35869240 - 35869196
Alignment:
| Q |
94 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
138 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35869240 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35869196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 35759888 - 35759847
Alignment:
| Q |
97 |
cacataacctttgtcaacactgaatacaatcacaaacgtttg |
138 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35759888 |
cacataacctttgtgaacactgaattcaaccacaaacgtttg |
35759847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 1303 - 1031
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||||||||| | |||||||||| || ||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
1303 |
gtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactg |
1204 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||| |||||| ||||| ||||||||| |||||||||| |
|
|
| T |
1203 |
aatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccact |
1104 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt |
294 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| ||||||| |||||| ||||||||||| |||||| | |||||| |
|
|
| T |
1103 |
agaaggtgatggtgatgttagtcaa---ctaccttctctttgtcaatctataagaaagaatttccttaaacccttt |
1031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 1676066 - 1675794
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||||||||| | |||||||||| || ||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
1676066 |
gtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactg |
1675967 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||| |||||| ||||| ||||||||| |||||||||| |
|
|
| T |
1675966 |
aatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccact |
1675867 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt |
294 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| ||||||| |||||| ||||||||||| |||||| | |||||| |
|
|
| T |
1675866 |
agaaggtgatggtgatgttagtcaa---ctaccttctctttgtcaatctataagaaagaatttccttaaacccttt |
1675794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 20862391 - 20862582
Alignment:
| Q |
17 |
cagtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacac |
116 |
Q |
| |
|
||||||| | ||||| |||||||||||| |||||||||||| |||| | |||||||||| | |||||||||||||||||| ||||||| |||||||| || |
|
|
| T |
20862391 |
cagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatac |
20862490 |
T |
|
| Q |
117 |
tgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtt |
208 |
Q |
| |
|
|||||||||||||||||| ||||| || |||| ||| || |||||||||||||| ||| ||| |||||||||| | |||||||||| |
|
|
| T |
20862491 |
tgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggtt |
20862582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 16685029 - 16685145
Alignment:
| Q |
178 |
gattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaaga |
277 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||| | ||| || |||||||||||||||| ||||||||||| | |||||| | ||||||| ||||||| |
|
|
| T |
16685029 |
gattttagctttgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaaga |
16685128 |
T |
|
| Q |
278 |
acttccttcagcccttt |
294 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
16685129 |
acttcctccaacccttt |
16685145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 2369 - 2098
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2369 |
gtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactg |
2270 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||||| ||| ||||| || || ||||||||||| ||| | |
|
|
| T |
2269 |
aatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagt |
2170 |
T |
|
| Q |
219 |
agaaggtgatggcg---atgttactcaagacataccctctctttctcaatcaataagaaagaacttccttca |
287 |
Q |
| |
|
|||| ||||| | |||||| ||||||||||| |||||||| | ||||||| ||||| ||||||||||| |
|
|
| T |
2169 |
ggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttca |
2098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 2994 - 3083
Alignment:
| Q |
48 |
tatcaatccattgttgatactagcaaaatttcttcaccttagaggcttt-cacataacctttgtcaacactgaatacaatcacaaacgttt |
137 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| || || ||||||||||| |||||||| ||| || ||| |||||||||| |||||||||| |
|
|
| T |
2994 |
tatcaatccattgttcaaactggcaaaatttatttac-ttagaggcttttcacataacatttttccacaatgaatacaattacaaacgttt |
3083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 2038 - 2305
Alignment:
| Q |
23 |
tgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactgaata |
122 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2038 |
tgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaata |
2137 |
T |
|
| Q |
123 |
caatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaa |
222 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||||| ||| ||||| || || ||||||||||| ||| | ||| |
|
|
| T |
2138 |
caatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaa |
2237 |
T |
|
| Q |
223 |
ggtgatggcg---atgttactcaagacataccctctctttctcaatcaataagaaagaacttccttca |
287 |
Q |
| |
|
| ||||| | |||||| ||||||||||| |||||||| | ||||||| ||||| ||||||||||| |
|
|
| T |
2238 |
gatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttca |
2305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 3088290 - 3088014
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||||||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||| || | |
|
|
| T |
3088290 |
gtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttgtcaataccg |
3088191 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||| | ||||||||||| ||||||| ||||||||| || | ||||||| |||| ||| | |
|
|
| T |
3088190 |
aatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatccaagatggtctaactccaat |
3088091 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
295 |
Q |
| |
|
|||||| |||| ||||||| ||||||| | | ||||||| ||||||| | ||||||||||| |||| ||||||| |
|
|
| T |
3088090 |
ggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttcattcaaccctttg |
3088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 24104640 - 24104364
Alignment:
| Q |
19 |
gtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaatttcttcaccttagaggctttcacataacctttgtcaacactg |
118 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||| ||||||| | ||||| ||| ||||||||||||||||||||||||||||||| || ||||| | |
|
|
| T |
24104640 |
gtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaacaccg |
24104541 |
T |
|
| Q |
119 |
aatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaacaccact |
218 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| | ||| | ||||||||||| |||| |||| |||||||||||||||||||||| |||| ||| | |
|
|
| T |
24104540 |
aatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaat |
24104441 |
T |
|
| Q |
219 |
agaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg |
295 |
Q |
| |
|
||||| |||| |||||||||||||||||| | ||||| |||||||| | | |||||||||||||||||||| |
|
|
| T |
24104440 |
ggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagccctttg |
24104364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 26903670 - 26903638
Alignment:
| Q |
103 |
acctttgtcaacactgaatacaatcacaaacgt |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
26903670 |
acctttgttaacactgaatacaatcacaaacgt |
26903638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 3310 - 3379
Alignment:
| Q |
224 |
gtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctt |
293 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
3310 |
gtgatggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagccctt |
3379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 1349579 - 1349627
Alignment:
| Q |
98 |
acataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatc |
146 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||| || |||||||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatc |
1349627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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