View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16972_low_5 (Length: 285)
Name: NF16972_low_5
Description: NF16972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16972_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 39984817 - 39984552
Alignment:
| Q |
14 |
gaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggac |
113 |
Q |
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| T |
39984817 |
gaatgcattggaaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaagaagatcgaggac |
39984718 |
T |
|
| Q |
114 |
accattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacccta |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||| |
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| T |
39984717 |
accattgaggctgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaacccta |
39984618 |
T |
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| Q |
214 |
tcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
279 |
Q |
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| T |
39984617 |
tcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgctgctcccggtgatgatgatg |
39984552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 8018410 - 8018634
Alignment:
| Q |
14 |
gaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggac |
113 |
Q |
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| T |
8018410 |
gaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatgat |
8018509 |
T |
|
| Q |
114 |
accattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacccta |
213 |
Q |
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| T |
8018510 |
gcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaa |
8018609 |
T |
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| Q |
214 |
tcattgccaagatgtaccaaggtgg |
238 |
Q |
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| T |
8018610 |
tcattgccaagatgtatcaaggtgg |
8018634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 8101759 - 8101614
Alignment:
| Q |
93 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaat |
192 |
Q |
| |
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| T |
8101759 |
gacaagaagcagattgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagc |
8101660 |
T |
|
| Q |
193 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
238 |
Q |
| |
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| || | |||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
8101659 |
ttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtgg |
8101614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 35 - 255
Target Start/End: Original strand, 17706694 - 17706911
Alignment:
| Q |
35 |
atacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccag |
134 |
Q |
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|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | |||||||| | |||||||||||||||||||| |||||| | |
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| T |
17706694 |
atacaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagacaagaaaa---ttgaggacaccattgaggctactatccgg |
17706790 |
T |
|
| Q |
135 |
tggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaag |
234 |
Q |
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|||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
17706791 |
tggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaag |
17706890 |
T |
|
| Q |
235 |
gtggtgcaggtcctgacatgg |
255 |
Q |
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||||||| |||| || ||||| |
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| T |
17706891 |
gtggtgctggtcttggcatgg |
17706911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 279
Target Start/End: Original strand, 17649328 - 17649568
Alignment:
| Q |
35 |
atacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccag |
134 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
17649328 |
atacaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgaggacaccattgaggctgctatccag |
17649424 |
T |
|
| Q |
135 |
tggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaag |
234 |
Q |
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|||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | ||||| |||||||||||||||||||||||||||||| |
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| T |
17649425 |
tggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaaccctatcattgccaagatgtaccaag |
17649523 |
T |
|
| Q |
235 |
gtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
279 |
Q |
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| T |
17649524 |
gtggtgcaggtcttgacatggatgccgctccaggtgatgatgatg |
17649568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 23597721 - 23597805
Alignment:
| Q |
153 |
cttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
237 |
Q |
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|||| |||||| ||||| |||||||||||||||||||| |||| || | ||||||||||||||||| | |||||| ||||||| |
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| T |
23597721 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 23588746 - 23588953
Alignment:
| Q |
30 |
tatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgcta |
129 |
Q |
| |
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||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| ||||| || | ||||||| |||| |
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| T |
23588746 |
tatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaaaattgaagatgctattgagggggcta |
23588845 |
T |
|
| Q |
130 |
tccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgta |
229 |
Q |
| |
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| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | ||||||||||||||||| | |||||| |
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| T |
23588846 |
ttcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgta |
23588945 |
T |
|
| Q |
230 |
ccaaggtg |
237 |
Q |
| |
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||||||| |
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| T |
23588946 |
tcaaggtg |
23588953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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