View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16973_high_10 (Length: 263)
Name: NF16973_high_10
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 38338763 - 38338588
Alignment:
| Q |
73 |
atccatgcatttgtagctttttgaagtctaatattttttatcccataattgaccttgctaattttcaaaactcttgttatctgaatgcaggaaaaggttg |
172 |
Q |
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| T |
38338763 |
atccatgcatttttagctttttgaagtctaatgtttcttatcccataattgaccttgctaattttcaaaactcttgttatctgaatgcaggaaaaggttg |
38338664 |
T |
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| Q |
173 |
caacagctgagcaggaccacatagaa---gttgaagatcgggaagatcccatggaaaatcaaattccggagcaatc |
245 |
Q |
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| T |
38338663 |
caacagctgagcaggaccacatagaagttgttgaagatcgggaagatcccatggaaaatcaaattccggagcaatc |
38338588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 38330377 - 38330246
Alignment:
| Q |
56 |
aggatatatttgattaaatccatgcatttgtagctttttgaagtctaatattttttatcccataattgaccttgctaattttcaaaactcttgttatctg |
155 |
Q |
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| T |
38330377 |
aggatatccttgattagatcgatacatttgtaaatttctgaagcctaatatttcttatcccata-ttaaccttgctaattttaaagactcttgttatctg |
38330279 |
T |
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| Q |
156 |
aatgcaggaaaaggttgcaacagctgagcagga |
188 |
Q |
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| T |
38330278 |
agtgcaggaagaggttgcaacagctgagcagga |
38330246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 38339030 - 38338976
Alignment:
| Q |
18 |
tatagttgccaaccctttccctcctgatttatagactaaggatatatttgattaa |
72 |
Q |
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| T |
38339030 |
tatagttgccaaccctttccctcctgatttatagactaaggatatatttgattaa |
38338976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 25381454 - 25381527
Alignment:
| Q |
118 |
taattgaccttgctaattttcaaaactcttgttatctgaa--tgcaggaaaaggttgcaacagctgagcaggac |
189 |
Q |
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| T |
25381454 |
taattgaccttgcaaatattcaagactcttgtaatctgaatgtgcaggaacaggttgcaacaactgagcaggac |
25381527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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