View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16973_high_14 (Length: 228)

Name: NF16973_high_14
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16973_high_14
NF16973_high_14
[»] chr7 (2 HSPs)
chr7 (22-151)||(47896779-47896908)
chr7 (178-215)||(47896907-47896944)
[»] chr1 (4 HSPs)
chr1 (52-151)||(31212576-31212675)
chr1 (52-151)||(31218331-31218430)
chr1 (149-213)||(31212467-31212531)
chr1 (149-213)||(31218222-31218286)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 47896779 - 47896908
Alignment:
Q  22 aaagtgaagggtggaggtaagtctatgatttaagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtcc 121  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47896779 aaagtgaagtgtggaggtaagtctatgatttaagaatagaaaattttccctacccatctcgtgtgaaccaaatacacaggagtgttaaattattttgtcc 47896878  T
Q  122 atgcgaaatttttctggatggaaataaatt 151  Q
    ||||||||||||||||||||||||||||||    
T  47896879 atgcgaaatttttctggatggaaataaatt 47896908  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 47896907 - 47896944
Alignment:
Q  178 ttatttcaacatttctgtaatagcaagaacagtataat 215  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47896907 ttatttcaacatttctgtaatagcaagaacagtataat 47896944  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 31212675 - 31212576
Alignment:
Q  52 taagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt 151  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31212675 taagaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt 31212576  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 31218430 - 31218331
Alignment:
Q  52 taagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt 151  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31218430 taagaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt 31218331  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 31212531 - 31212467
Alignment:
Q  149 attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31212531 attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata 31212467  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 31218286 - 31218222
Alignment:
Q  149 attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31218286 attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata 31218222  T

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