View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16973_high_6 (Length: 383)
Name: NF16973_high_6
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 374
Target Start/End: Original strand, 37134146 - 37134494
Alignment:
| Q |
23 |
acaccttatgagttgtacttaaacattttcccttgacatatattgtttcagcatctagcaacttgcaaagcaactagattggaccgaacgtataatcctt |
122 |
Q |
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| T |
37134146 |
acaccttatgagttgtacttaaacattttcccttgaaatatattgtttcagcatctagcaacttgcaaagcaactagattggaccgaacgtataatcctt |
37134245 |
T |
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| Q |
123 |
gatcnnnnnnnnnnnnnnnnnnnnnnatatatgaaaaatcatattagtgccctctatttaacatgttgtctataaaaaagattatgaaccacgtactaac |
222 |
Q |
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| T |
37134246 |
gatctttttttttccttcctttttttatatatgaaaaatcacattagtgccctctatttaacatgttgtctataaaa--gattatgaaccacgtactaac |
37134343 |
T |
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| Q |
223 |
gaatttttaaaggaaaaatggaagacgcaatttcttcatcgccttcttgttatcccattctacatgtgggtgttaatcttttttattattttcaatgttt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37134344 |
gaatttttaaaggaaaaatggaagacgcaatttcttcatcgccttcttgttatcccattctacatgtgggtgttaatc-tttttattattttcaatgttt |
37134442 |
T |
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| Q |
323 |
cctgagtttattgtgtatgcatgtaaaaggtttcgtctgtcactagaattat |
374 |
Q |
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| T |
37134443 |
cctgagtttattgtgtatgcatgtaaaaggtttcgtctgtcactagaattat |
37134494 |
T |
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