View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16973_low_13 (Length: 228)
Name: NF16973_low_13
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 36552675 - 36552492
Alignment:
| Q |
30 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggcc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36552675 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacagctttttggcc |
36552576 |
T |
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| Q |
130 |
ttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
215 |
Q |
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| T |
36552575 |
ttgttagcaaacttcagtgc--ctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
36552492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36524857 - 36524666
Alignment:
| Q |
1 |
ctttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgt |
100 |
Q |
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||||||| |||||||||||||||||||||||| |||||| |||| || ||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
36524857 |
ctttctgtctgaagaattccataccagtccatatcagacttagacagcttgttaagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgt |
36524758 |
T |
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| Q |
101 |
tttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgc |
194 |
Q |
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| T |
36524757 |
tttcaacatcagcatacatcgttttggccttgttagcaaacttcagtgc--ctctacaaattcacccctttgcattctactttccgccagttgc |
36524666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 36531184 - 36530999
Alignment:
| Q |
9 |
ctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaaca |
108 |
Q |
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|||||||| ||||||||||||||| ||| || |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36531184 |
ctgaagaactccataccagtccatatcatacttagacagcttgttgagtgcagcattgtgaacctcacaaacagcaaggatctgagcaatgttttcaaca |
36531085 |
T |
|
| Q |
109 |
tcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctt |
196 |
Q |
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| T |
36531084 |
tcagcatagagccttttggccttgttagcaaacttcagtgc--atctacaaattcacccctttgcattttagtttctgccagttgctt |
36530999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 26306155 - 26306355
Alignment:
| Q |
9 |
ctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaaca |
108 |
Q |
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|||||||||| |||| ||||||||||| ||||||||||||| || ||||||||| |||||||||||||||| ||||| | ||||||||||||||| ||| |
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| T |
26306155 |
ctgaagaatttcataatagtccatttcaaacatagagagtttcttcagtgcagcaatgtgaacctcacaaactgcaaggacctgagcaatgttttccaca |
26306254 |
T |
|
| Q |
109 |
tcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagc |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||| || |||| ||||| |
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| T |
26306255 |
ccagcatacagatttttggcctttttagcaaacttcagtgc--atctacgaattcacccctttgcattttagtttccgccagttgtttagcccttacagc |
26306352 |
T |
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| Q |
209 |
ctc |
211 |
Q |
| |
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||| |
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|
| T |
26306353 |
ctc |
26306355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 20716266 - 20716342
Alignment:
| Q |
1 |
ctttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcaca |
77 |
Q |
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||||||| |||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
20716266 |
ctttctgtctgaagaatttcataccagtccatttcacacctagagagtttgctgagtgcagcattgtgaacctcaca |
20716342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 47090698 - 47090764
Alignment:
| Q |
11 |
gaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcaca |
77 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
47090698 |
gaagaattccataccagtccatatcagacatagagagtttgttctgtgcagcacagtgaacctcaca |
47090764 |
T |
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