View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16973_low_14 (Length: 228)
Name: NF16973_low_14
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 47896779 - 47896908
Alignment:
| Q |
22 |
aaagtgaagggtggaggtaagtctatgatttaagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtcc |
121 |
Q |
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| T |
47896779 |
aaagtgaagtgtggaggtaagtctatgatttaagaatagaaaattttccctacccatctcgtgtgaaccaaatacacaggagtgttaaattattttgtcc |
47896878 |
T |
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| Q |
122 |
atgcgaaatttttctggatggaaataaatt |
151 |
Q |
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| T |
47896879 |
atgcgaaatttttctggatggaaataaatt |
47896908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 47896907 - 47896944
Alignment:
| Q |
178 |
ttatttcaacatttctgtaatagcaagaacagtataat |
215 |
Q |
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| T |
47896907 |
ttatttcaacatttctgtaatagcaagaacagtataat |
47896944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 31212675 - 31212576
Alignment:
| Q |
52 |
taagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt |
151 |
Q |
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| T |
31212675 |
taagaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt |
31212576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 31218430 - 31218331
Alignment:
| Q |
52 |
taagaatagaaaattttccctacccatctcgtgtgaacgaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt |
151 |
Q |
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| T |
31218430 |
taagaaaagaaaattttccctacccatctcgtgtgaaggaaatacacaggagtgttaaattattttgtccatgcgaaatttttctggatggaaataaatt |
31218331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 31212531 - 31212467
Alignment:
| Q |
149 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
213 |
Q |
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| T |
31212531 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
31212467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 31218286 - 31218222
Alignment:
| Q |
149 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
213 |
Q |
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| T |
31218286 |
attttcccatgttaattgattagtcaatgttatttcaacatttctgtaatagcaagaacagtata |
31218222 |
T |
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