View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16973_low_2 (Length: 623)
Name: NF16973_low_2
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Original strand, 37134464 - 37135111
Alignment:
| Q |
1 |
tgtaaaaggtttcgcctgtcactagaattatgaagttactttatttttattgttttctttaccgttatcaatttggtttaattatgttgcaatactctaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
37134464 |
tgtaaaaggtttcgtctgtcactagaattatgaagttactttatttttattgttttctttaccgttttcaatttggtttaattatgttgcaattctctaa |
37134563 |
T |
|
| Q |
101 |
cattgtgtgtgtatatatgatgtatacttt-------------ttggattgaaattttatatcatatagattatctctataaatatatgatttgtgtcta |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37134564 |
tattgtgtgtgtatatatgatgtatactttacaaaatttatctttggattgaaattttatatcatatagattatctctataaatatatgatttgtgtcta |
37134663 |
T |
|
| Q |
188 |
aagcctttttatgatcttgttcacaattacaatatctcaaaaaatattgacactgtaaataaatgaattgaaaaaatttaagttattgcagttttaaaat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37134664 |
aagcctttttatgatcttgttcacaattacaatatctcaaaaaatattgacactgtaagtaaatgaattgaaaaaatttaagttattacagttttaaaat |
37134763 |
T |
|
| Q |
288 |
gaacaatgctatttatctagataaattttgtagcgaaaatgaattgtccaataaaatagttttctgccac-aatcaaagaggtggtgagacataatttaa |
386 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37134764 |
gagcaatgctatttatctagataaattttgtagcgaaaatgaattgtccaataaaatagttttctgccacaaatcaaagaggtggtgagacataatttaa |
37134863 |
T |
|
| Q |
387 |
ggaaaa-tccttttaaaattt--------------------aaagattaaaattaaattgatggtttgaagctagctagaaactagattaatgttatata |
465 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37134864 |
ggaaaattccttttaaaatttataaagttgtttaaaaattaaaagattaaaattaaattgatggtttgaagctagctagaaactagattaatgttatata |
37134963 |
T |
|
| Q |
466 |
catatacatagggtggaaagcaagctcaatgtagttgtcattctctaacaagttaaccaaatatttgtttacaaacgtactaaaattaccgtnnnnnnnt |
565 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37134964 |
catatacatagggtggaaagcaagttcaatgtagttgtcattctctaacaagttaaccaaatatttgtttacaaacgtactaaaattaccgtaaaaaaat |
37135063 |
T |
|
| Q |
566 |
ggtagaccattcatagcaatattgtagttgaatcataggttagtataa |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37135064 |
ggtagaccattcatagcaatattgtagttgaatcataggttagtataa |
37135111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 13055225 - 13055264
Alignment:
| Q |
131 |
ttggattgaaattttatatcatatagattatctctataaa |
170 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13055225 |
ttggattgaaattttatattatatagatcatctctataaa |
13055264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 11207318 - 11207241
Alignment:
| Q |
318 |
tagcgaaaatgaattgtccaataaaatagttttctg-ccacaa-tcaaagaggtggtgagacataatttaaggaaaat |
393 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| ||| |||||| |||| | ||||||| | ||||||||||||||||| |
|
|
| T |
11207318 |
tagcgaaaattaagtgtccaataaaattgtttcctggccacaaatcaagggggtggtggggcataatttaaggaaaat |
11207241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University