View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16973_low_3 (Length: 566)

Name: NF16973_low_3
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16973_low_3
NF16973_low_3
[»] chr4 (13 HSPs)
chr4 (12-407)||(32291971-32292364)
chr4 (153-300)||(32291328-32291473)
chr4 (32-116)||(46476241-46476325)
chr4 (141-311)||(3167364-3167530)
chr4 (153-307)||(19130298-19130450)
chr4 (140-279)||(14473348-14473484)
chr4 (203-245)||(40912837-40912879)
chr4 (214-279)||(31634131-31634196)
chr4 (517-551)||(32292444-32292478)
chr4 (203-290)||(39412781-39412868)
chr4 (218-279)||(12590162-12590223)
chr4 (236-306)||(14472485-14472556)
chr4 (239-288)||(19129543-19129592)
[»] chr7 (5 HSPs)
chr7 (13-306)||(39044341-39044633)
chr7 (153-290)||(39045134-39045270)
chr7 (201-279)||(29314609-29314687)
chr7 (201-279)||(41224785-41224863)
chr7 (214-290)||(33687705-33687781)
[»] chr5 (4 HSPs)
chr5 (202-306)||(35107548-35107652)
chr5 (239-290)||(36912262-36912313)
chr5 (239-279)||(17591365-17591405)
chr5 (260-307)||(25993570-25993617)
[»] chr6 (2 HSPs)
chr6 (203-290)||(18605804-18605891)
chr6 (214-288)||(18605020-18605094)
[»] chr2 (3 HSPs)
chr2 (201-279)||(40992249-40992328)
chr2 (258-290)||(7994573-7994605)
chr2 (258-306)||(38740444-38740492)
[»] scaffold0155 (1 HSPs)
scaffold0155 (201-279)||(17367-17445)
[»] chr8 (1 HSPs)
chr8 (201-279)||(41092200-41092278)
[»] chr1 (2 HSPs)
chr1 (203-290)||(32537661-32537748)
chr1 (225-290)||(38469252-38469317)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 32291971 - 32292364
Alignment:
Q  12 agagactgaaaacagaatcggaagcgttccaatgaacccggtttgaatgtggtgttagtgaaatgaaagcaaggagtgcttgcttatcttgaaccggttc 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32291971 agagactgaaaacagaatcgaaagcgttccaatgaacccggtttgaatgtggtgttagtgaaatgaaagcaaggagtgcttgcttatcttgaaccggttc 32292070  T
Q  112 cgagtagatcttgaaatgaaagcaaggagtgcataactgaaacatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaagg 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||       ||| |||||||| |    
T  32292071 cgagtagatcttgaaatgaaagcaaggagtgcaaaactgaaacatgtgggagagagaatggttgggg-aagaaagtgagaaaaaa-tccagtgttaaatg 32292168  T
Q  212 agcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcctagactaaacgccaccattaa 311  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||    
T  32292169 agcatgataagattgtgttttctatttaatcaaagggttgaaaaataactttctcatggtgggaaaaagtagcatttcccagactaaacgccaccattaa 32292268  T
Q  312 atctgcatatatattcattttaaatctgcacataactcgttcctaggacaacaagcgaaacattcaaacatatataaccaatgaaacatacataga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32292269 atctgcatatatattcattttaaatctgcacataactcgttcctacgacaacaagcgaaacattcaaacatatataaccaatgaagcatacataga 32292364  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 153 - 300
Target Start/End: Complemental strand, 32291473 - 32291328
Alignment:
Q  153 acatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttga 252  Q
    |||||||||||||||||||||||||| |||||||||||       |||  ||||||  |||||| ||||||||||||||| |||||||||||||||||||    
T  32291473 acatgtgggagagagaatggttgggg-aagaaagtgagaaaaaa-tccaatgttaatcgagcataataagattgtgttctttatttaatcaaagggttga 32291376  T
Q  253 aaaacaactttcccatggtggaaaaaagtagcctttcctagactaaac 300  Q
    |||||||||||||||| |||| ||||| |||||||||| || ||||||    
T  32291375 aaaacaactttcccatagtgggaaaaaatagcctttcccaggctaaac 32291328  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 46476325 - 46476241
Alignment:
Q  32 gaagcgttccaatgaacccggtttgaatgtggtgttagtgaaatgaaagcaaggagtgcttgcttatcttgaaccggttccgagt 116  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46476325 gaagcgttccattgaacccggttcgagtgtggtgtttgtgaaatgaaagcaaggagtgcttgcttatcttgaaccggttccgagt 46476241  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 311
Target Start/End: Original strand, 3167364 - 3167530
Alignment:
Q  141 tgcataactgaaacatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaaggagcatgataagattgtgttctctatttaa 240  Q
    |||| |||||||||  |||||||||||||||||||||| |||||||||||       ||  |||||| ||||||||||||| |||||||| |  ||||||    
T  3167364 tgcagaactgaaac--gtgggagagagaatggttgggg-aagaaagtgagaaaaaattca-gtgttataggagcatgataatattgtgttattcatttaa 3167459  T
Q  241 tcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcctagactaaacgccaccattaa 311  Q
    ||||| |||| |||||||||||||||||||||| ||||||||  |||||| |  |||||| ||||| ||||    
T  3167460 tcaaatggttaaaaaacaactttcccatggtgggaaaaagtaatctttcccatgctaaaccccacccttaa 3167530  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 19130298 - 19130450
Alignment:
Q  153 acatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttga 252  Q
    |||||||||||||||||||||||||| |||||||||||       ||  |||||| ||||||||||||||||||||||||  ||||||||||| |||  |    
T  19130298 acatgtgggagagagaatggttgggg-aagaaagtgagaaaaaattca-gtgttagaggagcatgataagattgtgttcttcatttaatcaaatggtcca 19130395  T
Q  253 aaaacaactttcccatggtggaaaaaagtagcctttcctagactaaacgccacca 307  Q
    ||||||| ||||||||| ||| ||||| ||| |||||| |  |||||| ||||||    
T  19130396 aaaacaattttcccatgatgggaaaaaatagtctttcccatgctaaaccccacca 19130450  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 14473348 - 14473484
Alignment:
Q  140 gtgcataactgaaacatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaaggagcatgataagattgtgttctctattta 239  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||||||        ||  |||||| | |||||||||||||||||||| | ||||||    
T  14473348 gtgcagaactgaaacatgtgtgagagagaatggttgagg-aagaaagtgataaaaaattca-gtgttagatgagcatgataagattgtgttttttattta 14473445  T
Q  240 atcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    || ||| |||| ||||| ||||||  ||||||||||||||    
T  14473446 attaaatggtt-aaaaataactttttcatggtggaaaaaa 14473484  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 40912837 - 40912879
Alignment:
Q  203 tgttaaaggagcatgataagattgtgttctctatttaatcaaa 245  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  40912837 tgttaaaggagcatgataagattgtgttctttatttaatcaaa 40912879  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 31634196 - 31634131
Alignment:
Q  214 catgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    |||||||| ||||||||| ||||||||||||| |||| ||||  |||||||||||||| |||||||    
T  31634196 catgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtagaaaaaa 31634131  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 32292444 - 32292478
Alignment:
Q  517 tataaatctattttttgtccatttatcttataaat 551  Q
    |||||||||||||||||||||||||||||||||||    
T  32292444 tataaatctattttttgtccatttatcttataaat 32292478  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 39412868 - 39412781
Alignment:
Q  203 tgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    ||||||||||||||||||||| ||||||    |||| ||| || |||| ||||  |||||||||||| ||| ||||| ||||||||||    
T  39412868 tgttaaaggagcatgataagagtgtgtttatcatttgatccaatggttaaaaactaactttcccatgatgggaaaaattagcctttcc 39412781  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 12590162 - 12590223
Alignment:
Q  218 ataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    |||| ||||||||| |||||||||| || |||  ||||  ||||||||||||||||||||||    
T  12590162 ataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtggaaaaaa 12590223  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 14472556 - 14472485
Alignment:
Q  236 tttaatcaaagggttgaaaaacaactttcccatggtgg--aaaaaagtagcctttcctagactaaacgccacc 306  Q
    |||||||||| |||| |||||||||||| |||||||||  |||||| ||| |||||| ||||||||| |||||    
T  14472556 tttaatcaaatggtt-aaaaacaacttttccatggtgggaaaaaaaatagtctttcccagactaaaccccacc 14472485  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 19129592 - 19129543
Alignment:
Q  239 aatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagccttt 288  Q
    ||||||| |||| |||||||||||||||||||||| | ||| ||||||||    
T  19129592 aatcaaatggttcaaaaacaactttcccatggtgggagaaaatagccttt 19129543  T

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Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 39044633 - 39044341
Alignment:
Q  13 gagactgaaaacagaatcggaagcgttccaatgaacccggtttgaatgtggtgttagtgaaatgaaagcaaggagtgcttgcttatcttgaaccggttcc 112  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  39044633 gagactgaaaacagaatcggaagtgttccaatgaacccgatttgaatgtggtgtttgtgaaatgaaagcaaggagtgcttgcttatcttgaaccggttct 39044534  T
Q  113 gagtagatcttgaaatgaaagcaaggagtgcataactgaaacatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaagga 212  Q
     |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||       | | |||||||||||    
T  39044533 aagtagatcttgaaaggaaagcaaggagtgcagaactgaaacatgtgggagagagaatggtt-ggggaagaaagtgagaaaaaaattcagtgttaaagga 39044435  T
Q  213 gcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcctagactaaacgccacc 306  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||||| ||||||    
T  39044434 gcatgataagattgtgttctttatttaatcaaagggttgaaaaacaattttcccatggtgggaaaaagtaacctttcccagactaaatgccacc 39044341  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 39045134 - 39045270
Alignment:
Q  153 acatgtgggagagagaatggttgggggaagaaagtgagnnnnnnntcctgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttga 252  Q
    |||||||||||||||||||||||||| |||||||||||       ||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  39045134 acatgtgggagagagaatggttgggg-aagaaagtgagaaaaaaatccagtgttaatggagcatgataagactgtgttctttatttaatcaaagggttga 39045232  T
Q  253 aaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  39045233 aaaacaacttttccatggtgggaaaaagtagcctttcc 39045270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 29314687 - 29314609
Alignment:
Q  201 tgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    |||||| || || |||||||| ||||||||| ||||||||||||| |||| ||||  ||||||||||||||||||||||    
T  29314687 tgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtggaaaaaa 29314609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 41224785 - 41224863
Alignment:
Q  201 tgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    |||||| || || |||||||| ||||||||| ||||||||||||| |||| ||||  |||||||||||||||| |||||    
T  41224785 tgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtgggaaaaa 41224863  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 33687705 - 33687781
Alignment:
Q  214 catgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    |||||||| ||| ||||| ||| |||||  || |||| ||||  ||||||| |||||||||||||| ||||||||||    
T  33687705 catgataacattatgttccctacttaattcaatggttaaaaactaactttctcatggtggaaaaaattagcctttcc 33687781  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 35107548 - 35107652
Alignment:
Q  202 gtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcctagactaaacg 301  Q
    |||||| ||||||||| ||||||||||||||  |||| |||||| |||| |||||||||||| | ||||||| ||||| |||| |||| ||  ||||||     
T  35107548 gtgttagaggagcatggtaagattgtgttcttcatttgatcaaatggttcaaaaacaacttttctatggtgggaaaaaatagcatttcttatgctaaacc 35107647  T
Q  302 ccacc 306  Q
    |||||    
T  35107648 ccacc 35107652  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 36912313 - 36912262
Alignment:
Q  239 aatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    ||||||| |||| |||||||||||||||||||||| ||||| ||||||||||    
T  36912313 aatcaaatggttcaaaaacaactttcccatggtgggaaaaaatagcctttcc 36912262  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 17591365 - 17591405
Alignment:
Q  239 aatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  17591365 aatcaaatggttcaaaaacaactttcccatggtggaaaaaa 17591405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 25993570 - 25993617
Alignment:
Q  260 ctttcccatggtggaaaaaagtagcctttcctagactaaacgccacca 307  Q
    |||||||||||||| ||||| |||||||||| |||||||||| |||||    
T  25993570 ctttcccatggtgggaaaaactagcctttcccagactaaacgacacca 25993617  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 18605804 - 18605891
Alignment:
Q  203 tgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    ||||||||||||||||||||| ||||||    |||| ||| || |||| ||||  |||||||||||||||||||||| ||||||||||    
T  18605804 tgttaaaggagcatgataagagtgtgtttatcatttgatccaatggttaaaaacaaactttcccatggtggaaaaaattagcctttcc 18605891  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 18605094 - 18605020
Alignment:
Q  214 catgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagccttt 288  Q
    |||||||| ||| ||||| ||| |||||  || |||| ||||  |||||||||||||||||||||| ||||||||    
T  18605094 catgataaaattatgttccctacttaattcaatggttaaaaattaactttcccatggtggaaaaaattagccttt 18605020  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 40992328 - 40992249
Alignment:
Q  201 tgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggt-ggaaaaaa 279  Q
    ||||||||| || |||||||| ||||||||| ||||||||||||| |||| ||||  |||||||||||||| ||||||||    
T  40992328 tgtgttaaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaactttcccatggtaggaaaaaa 40992249  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 7994573 - 7994605
Alignment:
Q  258 aactttcccatggtggaaaaaagtagcctttcc 290  Q
    |||||||||||||||||||||| ||||||||||    
T  7994573 aactttcccatggtggaaaaaattagcctttcc 7994605  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 38740492 - 38740444
Alignment:
Q  258 aactttcccatggtggaaaaaagtagcctttcctagactaaacgccacc 306  Q
    |||||||||||||||| ||||| |  ||||||| |||||||||||||||    
T  38740492 aactttcccatggtgggaaaaactcccctttcccagactaaacgccacc 38740444  T

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Target: scaffold0155 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 17445 - 17367
Alignment:
Q  201 tgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    |||||| || || |||||||| ||||||||| |||||| |||||| |||| ||||  |||||||||||||||| |||||    
T  17445 tgtgttgaaagaccatgataaaattgtgttccctatttgatcaaatggttaaaaactaactttcccatggtgggaaaaa 17367  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 41092278 - 41092200
Alignment:
Q  201 tgtgttaaaggagcatgataagattgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaa 279  Q
    |||||| || || |||||||| ||||||||| ||||||||||||| |||| ||||  |||||| ||||||||| |||||    
T  41092278 tgtgttgaaagaccatgataaaattgtgttccctatttaatcaaatggttaaaaactaacttttccatggtgggaaaaa 41092200  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 32537748 - 32537661
Alignment:
Q  203 tgttaaaggagcatgataagattgtgt-tctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    ||||||||||||||||||||| ||||| | || |||| ||| || |||| ||||  |||||||||||||||| ||||| ||||||||||    
T  32537748 tgttaaaggagcatgataagagtgtgtatatc-atttgatccaatggttaaaaactaactttcccatggtgggaaaaattagcctttcc 32537661  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 38469252 - 38469317
Alignment:
Q  225 tgtgttctctatttaatcaaagggttgaaaaacaactttcccatggtggaaaaaagtagcctttcc 290  Q
    ||||||||  |||| ||| || |||| ||||  |||||||||||||||||||||| ||||||||||    
T  38469252 tgtgttcttgatttgatctaatggttaaaaactaactttcccatggtggaaaaaattagcctttcc 38469317  T

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