View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16973_low_4 (Length: 526)
Name: NF16973_low_4
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Original strand, 46587380 - 46587887
Alignment:
| Q |
17 |
acatatggctagaattttaatccaaggagttatcttccttgtgattgcttcaatggttgcagggtcaggaagcaaggccggaaccaaaagaagcatcttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
46587380 |
acatatggctagaattttaatccaaggagttatcttccttgtgattgcttcaatggttgcagggtcaagaagcaaggccagaaccaaaagaagcatcttg |
46587479 |
T |
|
| Q |
117 |
gttggagactctgaaggttggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46587480 |
gttggagactctgaaggttggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatc |
46587579 |
T |
|
| Q |
217 |
acaaata-tcaattaacannnnnnnnnnnnngacactaacacgacaccaacgcatttaattatatttaatcactttgannnnnnn-caaattattatcaa |
314 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46587580 |
acaaataatcaattaacatttttgtttttt-gacactaacacaacaccaacacatttaattatatttaatcactttgattttttttcaaattattatcaa |
46587678 |
T |
|
| Q |
315 |
atgtcgctgtgtgtccattgtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagt |
414 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46587679 |
aggtcgctgtgtgtccattgtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagt |
46587778 |
T |
|
| Q |
415 |
gttcaagtatccccctacaggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaag |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46587779 |
gttcaagtatccccctacaggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaag |
46587878 |
T |
|
| Q |
515 |
ttgcttggt |
523 |
Q |
| |
|
||||||||| |
|
|
| T |
46587879 |
ttgcttggt |
46587887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University