View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16973_low_7 (Length: 339)
Name: NF16973_low_7
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 53756482 - 53756163
Alignment:
| Q |
18 |
cttctgtggaccccacgaccgacactccccatttcatttccaccctttgaagcaaaaacattattattattaagatttgtccaatactatatccttccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53756482 |
cttctgtggaccccacgaccgacactccccatttcatttccaccctttgaagcaaaaacattattattattaagatttgtccaatactatatccttccaa |
53756383 |
T |
|
| Q |
118 |
gtgaattccctcaaatttttccctctcttttattttaacatttttcacactttaatacataccagtacacatcactcccttctcttcttccaccgcacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53756382 |
atgaattccctcaaatttttccctctcttttattttaacattttttacactttaatacataccagtacacatcactcccttctcttcttccaccgcacct |
53756283 |
T |
|
| Q |
218 |
ccctaatcatttctgacccctcccccacctcttttaaaagnnnnnnnnnnnnnnnnnncaattaaacattacaactatttagagttagcattgccgcgta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53756282 |
ccctaatcatttctgacccctcccccacctcttttaaaag--tctctttctctctctccaattaaacattacaactatttagagtaagcattgccgcgta |
53756185 |
T |
|
| Q |
318 |
gcgaggcaaaagagtttttgtt |
339 |
Q |
| |
|
| ||||||||||| |||||||| |
|
|
| T |
53756184 |
gagaggcaaaagattttttgtt |
53756163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University