View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16973_low_8 (Length: 334)
Name: NF16973_low_8
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 46588217 - 46587897
Alignment:
| Q |
13 |
cagagacaaaaatacatcatcatttctttctaggta-cacaaaccacaataaaaaacataannnnnnnnctttcgatacttcaggaaagaaaaaacagat |
111 |
Q |
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| T |
46588217 |
cagagacaaaaatacatcatcgtatttatctaggtagcacaaaccacaataaaaaacataattttttttctttcgatactccaggaaagaaaaaacagat |
46588118 |
T |
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| Q |
112 |
tgaaaccatccattttatttatatattgaattcaactaccttaaaaggaaaaaacttgattcaattgggccatgagggctaaattaaaaggaacgtgtag |
211 |
Q |
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| T |
46588117 |
ggaaaccatccattttatttatattttgaattcaactaccttaaaaggaaataacttgattcaattgggccatgagggttaaattaaaaggaacgtgtag |
46588018 |
T |
|
| Q |
212 |
atggaacagcaatgaacttggtgagtccagcaatacagtcataggcattaccttcatcagaggcaaagtaataaggcttcaactgattcagctcaatctt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46588017 |
atggaacagcaatgaacttggtgagtccagcaatacagtcataggcattgccttcatcagaggcaaagtaataaggcttcaattgattcagctcaatctt |
46587918 |
T |
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| Q |
312 |
tatcccctcaccaccaccttg |
332 |
Q |
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||||||||||||||||||||| |
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| T |
46587917 |
tatcccctcaccaccaccttg |
46587897 |
T |
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