View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16973_low_9 (Length: 274)
Name: NF16973_low_9
Description: NF16973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16973_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 19281476 - 19281572
Alignment:
| Q |
60 |
ggttgaccatgtggtacccctttaacctaaaatcatttcttttttagcaaacctaaaagcatttcaaatgtcatacattcgaaaattttaaaaatta |
156 |
Q |
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| T |
19281476 |
ggttgaccatgtggtacccctttaacctaaaagcatttcttttttagcaaacctaaaagcatttaaaatgtcatatatttgaaaattttaaaaatta |
19281572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 19277405 - 19277550
Alignment:
| Q |
60 |
ggttgaccatgtggtacccctttaacctaaaatcatttcttttttagcaaacctaaaagcatttcaaatgtcatacattcgaaaattttaaaaattatca |
159 |
Q |
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| T |
19277405 |
ggttgaccatgtgataccccct-aacctaaaagcattt--ttttgagcaaccctaaaagcatttaaaatgtcatatattcgaaaattttaaaaattatca |
19277501 |
T |
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| Q |
160 |
tataattaataagagtgcacattcaagttaattaaaattcggaatacttcatt |
212 |
Q |
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| T |
19277502 |
ta----taataagattgcacattaaacctaactaatattcggaatacttcatt |
19277550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 19281568 - 19281601
Alignment:
| Q |
163 |
aattaataagagtgcacattcaagttaattaaaa |
196 |
Q |
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| T |
19281568 |
aattaataagagtgcacattaaagttaattaaaa |
19281601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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