View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16974_high_1 (Length: 927)
Name: NF16974_high_1
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 671; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 1 - 908
Target Start/End: Original strand, 43521950 - 43522836
Alignment:
| Q |
1 |
gcaaagtacgaaccttcaaatcatataataaaagaaattcaaattagctaattgttcatttaatgcatataata------ttgttgctatttgaaaacat |
94 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43521950 |
gcaaagtaccaaccttcaaatcatataa---aagaaattcaaattagctaattgttcatttaatgcatataatgacattgttgttgctatttgaaaacat |
43522046 |
T |
|
| Q |
95 |
agacaaaattggacagaatatatttcaaacatataagaaatttaacaactnnnnnnnnntcaaggatgaaaaagtctgggcaatcaaacgttgcagtagt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43522047 |
agacaaaattggacagaatatatttcaaacgtataagaaatttaacagctaaaaaaaaatcaaggatgaaaaagtttgggcaatcaaacgttgcagtagt |
43522146 |
T |
|
| Q |
195 |
tgcaagttcacaacctttatcaaatgggttgtgaacaatagttatacaatgaccaaagagaaatgtgtttggcctcacaagcatacttgatgcttaatgc |
294 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522147 |
tgcaagttcgcaacctttatcaaatgggttgtgaa--------------tgaccaaggagaaatgtgtttggcctcacaagcatacttgatgcttaatgc |
43522232 |
T |
|
| Q |
295 |
gaagaggtgctaccatttctggaattacttttgcgtcttcggtcctgaaacagtgaaacatcatacacttcatttgagaaatagatcaacttgcaggtgt |
394 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522233 |
gaagaggtgctaccacttctggaattacttttgcgtcttcggtcctgaaaca--------tcatacacttcatttgagaaatagatcaacttgcaggtgt |
43522324 |
T |
|
| Q |
395 |
taaaatgagaaaagttgccttgtagtaataattagaatatatatttcaattacaatttcttcagacgagaattttaaagtaagttgaaatgaaccagatg |
494 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
43522325 |
taaaatgaaaaaagttgccttgtagtaataattagaatatatatttcaattacaatttcttcagacgagaattttaaagtaaggtgcaatgaaccagatg |
43522424 |
T |
|
| Q |
495 |
gaatttcatttnnnnnnnntcaattgctgtgaaatgttggaaacagacgattttatcaaaaagaatgagaagccaaacctctctaggtatcttatattct |
594 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43522425 |
gaatttcatttaaaaaaaatcaattgctgtgaaatgttagaaacagacgattttatcaaaaagaatgagaagccaaacctctctaggtatcttatatttt |
43522524 |
T |
|
| Q |
595 |
tccaattcaagcatggatctcatgattcatttttggtcttttttcagaatttggatcaacgcatctcaaagcagtcaaatgagctcgttttaagggaagg |
694 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522525 |
tccaattcaagcatggatcacatgattcatttttggtcttttttcagaatttggatcaacgcatctcaaagcagtcaaatgagctcgttttaagggaagg |
43522624 |
T |
|
| Q |
695 |
aacttgttaatggtctcaatgtatgagtccaccacctctttggtgtacctattaccaaccattaacttactcagtcgaccaagtttacccacaaaaatgc |
794 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522625 |
aacttgttgatggtctcaatgtttgagtccaccacctctttggtgtacctattacctaccattaacttactcagtcgaccaagtttacccacaaaaatgc |
43522724 |
T |
|
| Q |
795 |
aagatatgtatcagcaaataacccaaatgatagtagtcatgagagtctgcacaatccaaaatataacagacaagagtgctatggaaataactatagttgc |
894 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43522725 |
aagatatgtatcagcaaataacccaaatgata--agtcatgagagtctgcacaatccaaaatataacagacaagagtgctatggaaataactatagttgc |
43522822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 348 - 505
Target Start/End: Original strand, 51062447 - 51062602
Alignment:
| Q |
348 |
tgaaacatcatacacttcatttgagaaatagatcaacttgcaggtgttaaaatgagaaaagttgccttgtagtaataattagaatatatatttcaattac |
447 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| || | | || || |||||| |
|
|
| T |
51062447 |
tgaaacatcaaatgcttcatttgagaaatcgatcaacttgcaggtcttataatggaaaaagttgccttgtagtaatgatctta--aagtaattaaattac |
51062544 |
T |
|
| Q |
448 |
aatttcttcagacgagaattttaaagtaagttgaaatgaaccagatggaatttcattt |
505 |
Q |
| |
|
| ||||||||||| |||||||||||| |||||| || ||||| ||| ||||||||||| |
|
|
| T |
51062545 |
agtttcttcagacaagaattttaaaggaagttgcaaggaaccggattgaatttcattt |
51062602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 562 - 673
Target Start/End: Original strand, 51062679 - 51062792
Alignment:
| Q |
562 |
agaagccaaacctctctaggtatcttatattcttccaattcaagcatgg--atctcatgattcatttttggtcttttttcagaatttggatcaacgcatc |
659 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| ||||||||||| | | | ||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
51062679 |
agaagtcaaacctctctaggtatgggatattcttccgattcaagcatgcgaaccacttgactcatttttggtcttttttcagaatctggatcaacacatc |
51062778 |
T |
|
| Q |
660 |
tcaaagcagtcaaa |
673 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51062779 |
tcaaagcagtcaaa |
51062792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 669
Target Start/End: Complemental strand, 20219260 - 20219212
Alignment:
| Q |
621 |
tcatttttggtcttttttcagaatttggatcaacgcatctcaaagcagt |
669 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
20219260 |
tcatctttggtcttttttcagaatctggatcaacacatctcaaagcagt |
20219212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University