View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_10 (Length: 525)
Name: NF16974_high_10
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Original strand, 48815687 - 48816179
Alignment:
| Q |
20 |
taagccacaacgtctgtgctaacacatacctaccctcatcatcctaaatacacattcttatactgactttgttcgaagaagagaggaaggaagcatccac |
119 |
Q |
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| T |
48815687 |
taagccacaacgtctgtgctaacacatacctaccctcatcatcctaaatacacattcttatactgactttgttcgaagaagagaggaaggaagcatccac |
48815786 |
T |
|
| Q |
120 |
gttacacttaattcttcctactggccggtggtgacnnnnnnnttgacttgttgtttgcaaacattaattcgcctagtcatgattggcacactctaaaata |
219 |
Q |
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| T |
48815787 |
gttacacttaattcttcctactga----tggtgacaaaaaaattgtcttgttgtttgcaaacattaattcgcctagtcatgattggcacactctaaaata |
48815882 |
T |
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| Q |
220 |
tgagcggtcgtgtatatataacatgttgccaaatgtttgaattattgtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgagg |
319 |
Q |
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| T |
48815883 |
tgagcggtcgtgtatatataacatgttgccaaatgtttgaattattgtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgagg |
48815982 |
T |
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| Q |
320 |
caaccattgcaataaaagaaaaatcaatgctgcagcgttatattcttgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttga |
419 |
Q |
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| T |
48815983 |
caacctttgcaataaaagaaaaatcaatgttgcagcgttatattcttgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttga |
48816082 |
T |
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| Q |
420 |
acatcc----attagacattcaaataaaatgtgaagtttgtcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattc |
512 |
Q |
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| T |
48816083 |
acatccattaattagacattcaaataaaatgtgaattttgtcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattc |
48816179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 266 - 510
Target Start/End: Complemental strand, 21623397 - 21623153
Alignment:
| Q |
266 |
gtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgaggcaaccattgcaataaaagaaaaatcaatgctgcagcgttatattct |
365 |
Q |
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| T |
21623397 |
gtgcttccaaattctccataggattgtggcaaattatgtaaccttggttttaggaaaacgctgcaataagagaaaaattgatgtcgtagcgttataacct |
21623298 |
T |
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| Q |
366 |
tgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttgaacatccattagacattcaaataaaatgtgaagtttgtcctcgtagt |
465 |
Q |
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| T |
21623297 |
tgatgtaaagttgcagttacatcttgcaaaagaccaccatttcgccacacttgaacaactcttggccattcaaataaaatgtgaatttcgtcctcgtagt |
21623198 |
T |
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| Q |
466 |
tgtggttgcaatcgacacaagtagtcagacaatttatacctctat |
510 |
Q |
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| T |
21623197 |
tgtgattgcaaacaacacatgtagtcgaacaatttatacctctat |
21623153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 21623714 - 21623610
Alignment:
| Q |
35 |
gtgctaacacatacctaccctcatcatcctaaatacacattcttatactgactttgttcgaagaagagaggaaggaagcatccacgttacacttaattct |
134 |
Q |
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| T |
21623714 |
gtgctgacacaaacctgccctcatcatcccgaatacacactcctatacctactttgtt-gaagaagcggagaaggaagcatccacgttatacttaagtct |
21623616 |
T |
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| Q |
135 |
tcctac |
140 |
Q |
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|||||| |
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| T |
21623615 |
tcctac |
21623610 |
T |
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