View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_16 (Length: 449)
Name: NF16974_high_16
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 38 - 449
Target Start/End: Original strand, 7118078 - 7118489
Alignment:
| Q |
38 |
ttgcaaaattgttggtgtggatatagccgtaccaagccataggataggttcgtccatagatgaaatgatagctattaaatatgnnnnnnnaagtaaagta |
137 |
Q |
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| T |
7118078 |
ttgcaaaattgttggtgtggatatagccgtaccaagccataggataggttcgtccatagatgaaatgatagctattaaatatgttttttta-gtaaagta |
7118176 |
T |
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| Q |
138 |
aacttataatttataagttagtttgtgtgtcttgccaaagaaactcaaacccaattttagttgaaaacaataaaacatgacaaaattgattctagacctc |
237 |
Q |
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| T |
7118177 |
aacttataatttataagttagtttgtgtgtcttgccaaagaaactcaaacccaattttagttgaaaacaataaaacatgacaaaattgattctagacctc |
7118276 |
T |
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| Q |
238 |
aaaaatcaattttgtcttctcaaaaattaaaaaccaaacacaaacgtagtgattctagccgttcaatattaaatcaacaatgaagatccttttaattttt |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7118277 |
aaaaatcaattttgtcttctcaaaaattaaaaaccaaacacaaacgtagtgattctagccgttcaatattaaatcaacaatgaagatccttttaactttt |
7118376 |
T |
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| Q |
338 |
ataaaatatgttttttaaagatgatttagtgaagatataa-gtgagtcggtcaaatcttaaatcgttgttgtaaatgcgagtttctttttagaaatgata |
436 |
Q |
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| T |
7118377 |
ataaaatatgttttttaaagatgatttagtaaagatataacgtgagtcggtcaaatcttaaatcgttgttgcaaatgcgagtttctttttagaaatgata |
7118476 |
T |
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| Q |
437 |
tttgtacaattat |
449 |
Q |
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| T |
7118477 |
tttgtacaattat |
7118489 |
T |
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