View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_20 (Length: 418)
Name: NF16974_high_20
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 13871876 - 13871488
Alignment:
| Q |
19 |
tacatagatcaaataatagggatagtaattatttctattttatctctttctggttttatgtatatctaatacatagaggacacatttggacaaagtatat |
118 |
Q |
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| T |
13871876 |
tacatagatcaaataatagggatagtaattatttctattttatctctttctggttttatgtatatctaatacatagaggacacatttggaaaaagtatat |
13871777 |
T |
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| Q |
119 |
caatggtggaggatatatgggaaatcatttcaatggtgatgaaattggtggctgcaatgactaaatgaagttactaaacacatccaatccaa-ttcaaga |
217 |
Q |
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| T |
13871776 |
caatggtgtaggatatgtgggaaatcatttcaatggtgatgaaattggtggctgcaatgactacatgaagttactaaacacatccaatccaagtccaagt |
13871677 |
T |
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| Q |
218 |
ccatttcttttcatatgatagacttcacaagtttaagagccaattagattaattttcgctaattgtgtacaaggcaccattggacttcatcgnnnnnnnt |
317 |
Q |
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| T |
13871676 |
cca-ttctttccatatgatagacttcacaagtttaagagccaattagattaattttcgctaattgtgtacaaggcaccattggacttcatccaaaaaaat |
13871578 |
T |
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| Q |
318 |
tggcttgccacaaactcttgtcagtatagccgtaggatgtaaaacaaacaaactattaatctctatctatgggaagagtaacatttgatgat |
409 |
Q |
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| T |
13871577 |
tggcttgccacaaactcttgtcggtatagccgtaggatgtaaaacaaacaaactattaa--tctatctatgggaagagtaacatttgatgat |
13871488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 50 - 291
Target Start/End: Complemental strand, 13878203 - 13877965
Alignment:
| Q |
50 |
tttctattttatctctttctggttttatgtatatctaatacatagaggacacatttggacaaagtatatcaatggtggaggatatatgggaaatcatttc |
149 |
Q |
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| T |
13878203 |
tttctattttatctctttctggttttatgtatatgtaattcatagagtacacatttggacaaagtagatcaatggtggaggatatgtgggaaatcaattc |
13878104 |
T |
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| Q |
150 |
aatggtgatgaaattggtggctgcaatgactaaatgaagttactaaacacatccaatccaattcaagaccatttcttttcatatgatagacttcacaagt |
249 |
Q |
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| T |
13878103 |
aatggtgatgaaattggtggctgcaatgacttcatgaagttacagaccacatccaatccaatccaagtcca-ttcttttcatattatagacttcacaagt |
13878005 |
T |
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| Q |
250 |
ttaagagccaattagattaattttcgctaattgtgtacaagg |
291 |
Q |
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| T |
13878004 |
ttaagagcc--ttcgattaattttccctaattttgttcaagg |
13877965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 58 - 302
Target Start/End: Complemental strand, 13874376 - 13874148
Alignment:
| Q |
58 |
ttatctctttctggttttatgtatatctaatacatagaggacacatttggacaaagtatatcaatggtggaggatatatgggaaatcatttcaatggtga |
157 |
Q |
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| T |
13874376 |
ttatctctttctggttttatgtatat-------atagagtaca--tttggacaaagtatatcaatggtggatgatatatgggaaatcaattcaatgacga |
13874286 |
T |
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| Q |
158 |
tgaaattggtggctgcaatgactaaatgaagttactaaacacatccaatccaattcaagaccatttcttttcatatgatagacttcacaagtttaagagc |
257 |
Q |
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| T |
13874285 |
tgaaattggtggctgcagtgactgcatgaagttactgaccacatccaatc-----aaagtccgtttcttttcatatgatagactacacaagtttaaga-- |
13874193 |
T |
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| Q |
258 |
caattagattaattttcgctaattgtgtacaaggcaccattggac |
302 |
Q |
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| T |
13874192 |
tacttagattaattttcgctaattttgttcaaggcacaattggac |
13874148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 13880845 - 13880771
Alignment:
| Q |
100 |
acatttggacaaagtatatcaatggtggaggatatatgggaaatcatttcaatggtgatgaaattggtggctgca |
174 |
Q |
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| T |
13880845 |
acattgggacaaagtagatcaatggtggaggatttgtgaaaaatcaattcaatgtttatgaaattggtagctgca |
13880771 |
T |
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