View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_25 (Length: 391)
Name: NF16974_high_25
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 50 - 376
Target Start/End: Complemental strand, 4994651 - 4994316
Alignment:
| Q |
50 |
gacaaagttactagtaagtcctttgaaacaacaatgaaactatgcaaatgaagctcatacaaatttaaccggtctttcatcgtggaccctttagcaacaa |
149 |
Q |
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| T |
4994651 |
gacaaagttactagtaagtcctttgaaacaacaatgaaactatgcaaatgaagctcatacaaatttaaccggtctttcatcgtggaccctttagcaacaa |
4994552 |
T |
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| Q |
150 |
ataattacagaatctacaaaagaatgaacagcatagaaaataatgtatttgttgactttaatgttgtactactactgaataccactactaccaaataccc |
249 |
Q |
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| T |
4994551 |
ataattacagaatctacaaaagaatgaacagcatagaaaataatgtatttgttgactttaatgttgtactactactgaataccactactaccaaataccc |
4994452 |
T |
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| Q |
250 |
tttgcactttgtcggtgaccttaagaccttaattccccattaaagttgataaagtcgggtattggcaagtcatgatagtttcatcatttggtcattg--- |
346 |
Q |
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| T |
4994451 |
tttgcactttgtcggtgaccttaagaccttaatttcccattaaagttgataaagtcgggtattggcaagtcatgatagtttcatcatttggtcattgaac |
4994352 |
T |
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| Q |
347 |
------aacgacatccctgttgttacacgtcatgaa |
376 |
Q |
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| T |
4994351 |
caagtaaacgacatccctgttgttacacgtcatgaa |
4994316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4994704 - 4994669
Alignment:
| Q |
1 |
actaggattcaatgtgacattgttcctagtaagtcc |
36 |
Q |
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| T |
4994704 |
actaggattcaatgtgacattgttcctaggaagtcc |
4994669 |
T |
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