View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_30 (Length: 339)
Name: NF16974_high_30
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 18129660 - 18129928
Alignment:
| Q |
16 |
aatatgtaatgaagttactatgactcaatataattgtgcttatggctaaaaccatggatatagccaataactacctgtgaagtagataagt---gttgag |
112 |
Q |
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| T |
18129660 |
aatatgtaatgaagttactacgactcaatatcattgtgcctatggctaaaaccatggatatagccaataactacctttgaagtagataagtcacgttgag |
18129759 |
T |
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| Q |
113 |
atggtttctccgaaggaagtcgaagtattcctgtaatattaacattataatacacnnnnnnnnnnacattactctatttgtcgtaagttataagtcacgt |
212 |
Q |
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| T |
18129760 |
attgtttctccgagggaagtagaagtattcctgcaatattaacattataatacactttc-------cattactctatttgtcgtaagttata-------- |
18129844 |
T |
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| Q |
213 |
tgcaaaaaataatttgtttaaaattagaaatcatttgactatattcttaaaacattactgtttcctcttacaaaattaactatctttttt |
302 |
Q |
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| T |
18129845 |
---aaaaaataatttgtttaaaattagaaatcatttgactatattcataaaacat---tgtttcctcttacaaaattaactatcattttt |
18129928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 295
Target Start/End: Original strand, 18066465 - 18066646
Alignment:
| Q |
107 |
gttgagatggtttctccgaaggaagtcgaagtattcctgtaatattaacattataatacacnnnnnnnnnnacattactctatttgtcgtaagttataag |
206 |
Q |
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| T |
18066465 |
gttgagatggtttctgcgagggaagtagaagtatacctgcaatagtaacattaaaatacactttg-------cattactctatttgtcgtaagttataag |
18066557 |
T |
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| Q |
207 |
tcacgttgcaaaaaataatttgtttaaaattagaaatcatttgactatattcttaaaacattactgtttcctcttacaaaattaactat |
295 |
Q |
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| T |
18066558 |
tcacgttgcaaaaaataatttgtttaaaattagaaatcatttgactatattcataaaacattattgtttcctcttacaaaattaactat |
18066646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 256
Target Start/End: Original strand, 18103106 - 18103279
Alignment:
| Q |
79 |
ccaataactacctgtgaagtagataagt---gttgagatggtttctccgaaggaagtcgaagtattcctgtaatattaacattataatacacnnnnnnnn |
175 |
Q |
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| T |
18103106 |
ccaataactacctgtgaagtagataagtcacgttgagatgatttctccgagggaagtagaagtatgcctgcaatattaacattaaaatacactttg---- |
18103201 |
T |
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| Q |
176 |
nnacattactctatttgtcgtaagttataagtcacgttgcaaaaaataatttgtttaaaattagaaatcatttgactatat |
256 |
Q |
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| T |
18103202 |
---cattactcgattcgtcgtaagttataagtcacgttgcaaaaaataatttgtctcaacttaaaaatcatttgagtatat |
18103279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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