View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_high_31 (Length: 336)

Name: NF16974_high_31
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_high_31
NF16974_high_31
[»] chr8 (6 HSPs)
chr8 (181-245)||(33295119-33295183)
chr8 (11-88)||(33295275-33295352)
chr8 (181-245)||(25264643-25264707)
chr8 (16-92)||(25265730-25265806)
chr8 (33-92)||(33294100-33294159)
chr8 (50-92)||(25264514-25264556)
[»] chr7 (19 HSPs)
chr7 (181-245)||(8231304-8231368)
chr7 (181-245)||(32882388-32882452)
chr7 (181-245)||(40028779-40028843)
chr7 (181-245)||(45276713-45276777)
chr7 (14-92)||(8231459-8231537)
chr7 (181-245)||(21716311-21716375)
chr7 (181-245)||(31393333-31393397)
chr7 (14-92)||(32882540-32882618)
chr7 (14-92)||(31393484-31393562)
chr7 (16-92)||(21715230-21715306)
chr7 (16-92)||(45277792-45277868)
chr7 (16-90)||(40028615-40028689)
chr7 (14-92)||(4675622-4675700)
chr7 (14-92)||(31392214-31392292)
chr7 (14-92)||(32881272-32881350)
chr7 (50-92)||(21716462-21716504)
chr7 (50-92)||(40029872-40029914)
chr7 (50-92)||(45276583-45276625)
chr7 (184-227)||(18852410-18852453)
[»] chr5 (11 HSPs)
chr5 (181-245)||(1417716-1417780)
chr5 (181-245)||(25914793-25914857)
chr5 (181-240)||(30333704-30333763)
chr5 (14-92)||(25916103-25916181)
chr5 (33-85)||(30332443-30332495)
chr5 (50-92)||(1417585-1417627)
chr5 (50-92)||(1418779-1418821)
chr5 (50-92)||(25914664-25914706)
chr5 (50-92)||(30333851-30333893)
chr5 (184-245)||(4743947-4744008)
chr5 (183-227)||(27914912-27914956)
[»] chr4 (13 HSPs)
chr4 (181-245)||(19995745-19995809)
chr4 (181-245)||(44251908-44251972)
chr4 (181-245)||(53355404-53355468)
chr4 (14-92)||(55948778-55948856)
chr4 (181-244)||(55948631-55948691)
chr4 (14-92)||(44253017-44253095)
chr4 (184-241)||(39653499-39653556)
chr4 (14-92)||(55947516-55947593)
chr4 (14-64)||(18597788-18597838)
chr4 (50-92)||(19994672-19994714)
chr4 (50-92)||(19995897-19995939)
chr4 (50-92)||(44251779-44251821)
chr4 (51-92)||(53355275-53355316)
[»] chr3 (6 HSPs)
chr3 (181-245)||(33734208-33734272)
chr3 (16-92)||(33733123-33733199)
chr3 (181-245)||(53528277-53528338)
chr3 (33-92)||(53528130-53528189)
chr3 (51-92)||(33734360-33734401)
chr3 (53-92)||(53529377-53529416)
[»] chr1 (18 HSPs)
chr1 (181-245)||(19056589-19056653)
chr1 (181-245)||(33258167-33258231)
chr1 (181-245)||(33278339-33278403)
chr1 (14-92)||(7655089-7655167)
chr1 (181-240)||(28920348-28920407)
chr1 (14-92)||(7653842-7653920)
chr1 (33-91)||(28919243-28919301)
chr1 (14-92)||(36145500-36145578)
chr1 (14-92)||(19057692-19057770)
chr1 (185-245)||(36146607-36146664)
chr1 (181-224)||(7654959-7655002)
chr1 (14-88)||(16673085-16673159)
chr1 (184-245)||(24088976-24089037)
chr1 (50-92)||(36146755-36146797)
chr1 (51-92)||(33258040-33258081)
chr1 (51-92)||(33278212-33278253)
chr1 (50-92)||(33259215-33259257)
chr1 (50-92)||(33279374-33279416)
[»] scaffold0489 (3 HSPs)
scaffold0489 (181-244)||(6569-6632)
scaffold0489 (51-92)||(5541-5582)
scaffold0489 (51-92)||(6658-6699)
[»] chr2 (10 HSPs)
chr2 (185-245)||(1841442-1841502)
chr2 (181-245)||(13948268-13948332)
chr2 (181-245)||(14089475-14089539)
chr2 (14-92)||(1840313-1840391)
chr2 (14-92)||(14089092-14089170)
chr2 (14-92)||(13948420-13948498)
chr2 (14-92)||(14089627-14089705)
chr2 (33-92)||(1841595-1841654)
chr2 (50-92)||(13947921-13947963)
chr2 (184-245)||(40745829-40745890)
[»] chr6 (3 HSPs)
chr6 (181-225)||(19083831-19083875)
chr6 (50-92)||(19082840-19082882)
chr6 (51-92)||(19083963-19084004)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 33295183 - 33295119
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33295183 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33295119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 33295352 - 33295275
Alignment:
Q  11 caaaggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagag 88  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  33295352 caaaggatgacgtgatagtgcctgacgtggcagataatgctgacgtggcaaacttattgatgagtcacacagtgagag 33295275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 25264643 - 25264707
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25264643 tagctttcttcatcttcttccttccacctctttaacatcttcatcattgtcttcataaattcatc 25264707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 25265806 - 25265730
Alignment:
Q  16 gatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||  |||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||    
T  25265806 gatgacgtggtagtgcctgacgtggcagacgatgctgacgtggaaaacttattgatgagtcacaaagtgagagggac 25265730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 33294100 - 33294159
Alignment:
Q  33 tgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||    
T  33294100 tgacgtggcagacgatgctggcgtgacaaacttattgatgagtcacgcagtgagagggac 33294159  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 25264514 - 25264556
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  25264514 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 25264556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 8231368 - 8231304
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8231368 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 8231304  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 32882452 - 32882388
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32882452 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 32882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 40028779 - 40028843
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40028779 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 40028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 45276713 - 45276777
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45276713 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 45276777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 8231537 - 8231459
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||    
T  8231537 aggatgacgtgacagtgcctgacgtggcagacgatgctgacgtggcaaacttattgatgagtcacccagtgagagggac 8231459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 21716375 - 21716311
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21716375 tagctttcttcatcttcttccttccacctctttaacatcttcatcattgtcttcataaattcatc 21716311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 31393397 - 31393333
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31393397 tagctttcttcatcttcttccttccacctcttttacatctccatcattgtcttcataaattcatc 31393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 32882618 - 32882540
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  32882618 aggatgacgtggcagtgtctaacgtggcagacgatgctgacgtgacaaacttattgatgagtcacacagtgagagggac 32882540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 31393562 - 31393484
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| || ||||||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  31393562 aggatgacatgtcagtgcctgacgtggcatacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 31393484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 21715230 - 21715306
Alignment:
Q  16 gatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||  |||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||    
T  21715230 gatgacgtggtagtgcctgacgtggcagacgatgctgacgtggaaaacttattgatgagtcacacagtgagagggac 21715306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 45277868 - 45277792
Alignment:
Q  16 gatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||| ||||||||    
T  45277868 gatgacgtgatagtgcctgacgtggcagacgatgctgacgtggaaaacttattgatgagtcacacagtaagagggac 45277792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 40028615 - 40028689
Alignment:
Q  16 gatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagaggg 90  Q
    ||||||||| ||||| ||| ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  40028615 gatgacgtggcagtgtctggcgtggcagacgatgccgacgtggcaaacttattgatgagtcacacagtgagaggg 40028689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 4675700 - 4675622
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  ||  |||||||||||||| |||||||||||| ||||||||||||| | ||||| ||||||||||||    
T  4675700 aggatgacgtggtagaacctgacgtggcagacgatgctgacgtggcaaacttattgattattcacacagtgagagggac 4675622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 31392214 - 31392292
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  ||||||| || ||||||| |||||||||||  |||||||||||||||| |||| ||||||||||||    
T  31392214 aggatgacgtggtagtgcctaacatggcagacgatgctgacgtagcaaacttattgatgaggcacacagtgagagggac 31392292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 32881272 - 32881350
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  |||| |||||| ||||||  |||||||| ||||||||||||| |||||||||| ||||||||||||    
T  32881272 aggatgacgtggtagtgtctgacgcggcagacaatgctgacatgacaaacttattaatgagtcacacagtgagagggac 32881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 21716504 - 21716462
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  21716504 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 21716462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 40029914 - 40029872
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  40029914 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 40029872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 45276583 - 45276625
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  45276583 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 45276625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 18852453 - 18852410
Alignment:
Q  184 ctttcttcatcttcttccttccacctcttttacatcttcatcat 227  Q
    |||||||||||||||||||| |||||||| | ||||||||||||    
T  18852453 ctttcttcatcttcttcctttcacctcttcttcatcttcatcat 18852410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 1417716 - 1417780
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1417716 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 1417780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 25914793 - 25914857
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25914793 tagctttcttcatcttcttccttccacctcttttacatattcatcattgtcttcataaattcatc 25914857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 30333763 - 30333704
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaat 240  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30333763 tagctttcttcatcttcttccttccacctcttatacatcttcatcattgtcttcataaat 30333704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 25916181 - 25916103
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| |||  |||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25916181 aggatgatgtggtagtgcctgacgtggcagacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 25916103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 30332443 - 30332495
Alignment:
Q  33 tgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtga 85  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||| |||||    
T  30332443 tgacgtggcagacaatgctgacgtggcaaacttattgatgagtcacacagtga 30332495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 1417585 - 1417627
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  1417585 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 1417627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 1418821 - 1418779
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  1418821 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 1418779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 25914664 - 25914706
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  25914664 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 25914706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 30333893 - 30333851
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| |||| |||||||    
T  30333893 ctgacgtggcaaacttattgatgagtcacacagtgcgagggac 30333851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 4744008 - 4743947
Alignment:
Q  184 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||| ||| |||||| | |||||||||||   |||||||| |||||||    
T  4744008 ctttcttcatcttcttccctcctcctcttctccatcttcatcaccatcttcatacattcatc 4743947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 27914956 - 27914912
Alignment:
Q  183 gctttcttcatcttcttccttccacctcttttacatcttcatcat 227  Q
    ||||||||||||||||||||| |||||||| | |||||| |||||    
T  27914956 gctttcttcatcttcttcctttcacctcttcttcatcttaatcat 27914912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 19995809 - 19995745
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19995809 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 19995745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 44251908 - 44251972
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44251908 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 44251972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 53355404 - 53355468
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53355404 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 53355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 55948856 - 55948778
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  55948856 aggatgacgtggcagtgcctgacgtggcagacgatgctggcgtggcaaacttattgatgagtcacacagtgagagggac 55948778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 55948691 - 55948631
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  55948691 tagctttcttcatcttcttccttccacctcttttacatcttcatc---gtcttcataaattcat 55948631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 44253095 - 44253017
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||| ||||  ||||||| || ||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||    
T  44253095 aggatggcgtggtagtgcctaacatggcagacgatgctgacgtggcaaacttattgatgaggcacacagtgagagggac 44253017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 39653499 - 39653556
Alignment:
Q  184 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaatt 241  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||    
T  39653499 ctttcttcatcttcttcattccacctttttttcatcttcatcattatcttcataaatt 39653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 55947516 - 55947593
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| |||  ||||||| |||||||||| |||| ||||||| ||||||||||||||||||||| ||| ||||||||    
T  55947516 aggatgatgtggtagtgcctaacgtggcagacgatgttgacgtggcaaacttattgatgagtcacacagt-agagggac 55947593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 18597788 - 18597838
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaact 64  Q
    |||||||||||  |||||||||||||||||| |||||||||||| ||||||    
T  18597788 aggatgacgtggtagtgcctgacgtggcagacgatgctgacgtggcaaact 18597838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 19994672 - 19994714
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  19994672 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 19994714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 19995939 - 19995897
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  19995939 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 19995897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 44251779 - 44251821
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  44251779 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 44251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 53355275 - 53355316
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  53355275 tgacgtggcaaacttattgatgagtcacacagtgagagggac 53355316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 33734272 - 33734208
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33734272 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33734208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 33733123 - 33733199
Alignment:
Q  16 gatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33733123 gatgacgtgctagtgcctgacgtggcagacgatgctgacgtgacaaacttattgatgagtcacacagtgagagggac 33733199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 53528277 - 53528338
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  53528277 tagctttcttcatcttcttccttccacctcttttacatcttcatc---gtcttcataaattcatc 53528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 53528130 - 53528189
Alignment:
Q  33 tgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||  |||||||||||    
T  53528130 tgacgtggcagacgatgctgacgtggcaaacttattgatgagtcacacggtgagagggac 53528189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 33734401 - 33734360
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  33734401 tgacgtggcaaacttattgatgagtcacacagtgagagggac 33734360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 53529416 - 53529377
Alignment:
Q  53 acgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  53529416 acgtggcaaacttattgatgagtcacacagtgagagggac 53529377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 19056589 - 19056653
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19056589 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 19056653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 33258167 - 33258231
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258167 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33258231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 33278339 - 33278403
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33278339 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 33278403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 7655167 - 7655089
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  7655167 aggatgacgtggcagtgcctgacatggcagacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 7655089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 28920407 - 28920348
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaat 240  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28920407 tagctttcttcatcttcttcctttcacctcttttacatcttcatcattgtcttcataaat 28920348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 7653842 - 7653920
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  ||||||| |||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  7653842 aggatgacgtggtagtgcctaacgtggcagacgatgttgacgtggcaaacttattgatgagtcacacagtgagagggac 7653920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 28919243 - 28919301
Alignment:
Q  33 tgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagaggga 91  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  28919243 tgacgtggcagacgatgctgacgtgacaaacttattgatgagtcacacagtgagaggga 28919301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 36145500 - 36145578
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  ||||||| |||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  36145500 aggatgacgtggtagtgcctaacgtggcagacgatgttgacgtggcaaacttattgatgagtcacacagtgagagggac 36145578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 19057770 - 19057692
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  ||||||||| |||||||| |||||||||||| ||||||||||||| | ||||| ||||||||||||    
T  19057770 aggatgacgtggtagtgcctgatgtggcagacgatgctgacgtggcaaacttattgatcaatcacacagtgagagggac 19057692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 36146664 - 36146607
Alignment:
Q  185 tttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  36146664 tttcttcatcttcttccttccacctcttttacatcttcatc---gtcttcataaattcatc 36146607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 7655002 - 7654959
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcat 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7655002 tagctttcttcatcttcttccttccacctcttttacatcttcat 7654959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 16673159 - 16673085
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagag 88  Q
    |||||||||||  |||||||||||||||||| |||||| |||||  |||||||||||||||||||| | ||||||    
T  16673159 aggatgacgtggtagtgcctgacgtggcagacgatgctcacgtggaaaacttattgatgagtcacacaatgagag 16673085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 24089037 - 24088976
Alignment:
Q  184 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||| |||| ||||||| ||||||||| ||| || |||||||||||||    
T  24089037 ctttcttcatcttcttccgtccatctctttttcatcttcattattatcatcataaattcatc 24088976  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 36146797 - 36146755
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  36146797 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 36146755  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 33258040 - 33258081
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  33258040 tgacgtggcaaacttattgatgagtcacacagtgagagggac 33258081  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 33278212 - 33278253
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  33278212 tgacgtggcaaacttattgatgagtcacacagtgagagggac 33278253  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 33259257 - 33259215
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  33259257 ctgacgtggaaaacttattgatgagtcacacagtgagagggac 33259215  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 33279416 - 33279374
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  33279416 ctgacgtggaaaacttattgatgagtcacacagtgagagggac 33279374  T

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Target: scaffold0489 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 6632 - 6569
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6632 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcat 6569  T

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Target: scaffold0489; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 5541 - 5582
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  5541 tgacgtggcaaacttattgatgagtcacacagtgagagggac 5582  T

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Target: scaffold0489; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 6699 - 6658
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||| |||||||||||||||||||||||| ||||||| ||||    
T  6699 tgacatgacaaacttattgatgagtcacacagtgagaaggac 6658  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 1841502 - 1841442
Alignment:
Q  185 tttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841502 tttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 1841442  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 13948332 - 13948268
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13948332 tagctttcttcatcttcttccctccacctcttttacatcttcatcattgtcttcataaattcatc 13948268  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 14089539 - 14089475
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14089539 tagctttcttcatcttcttccctccacctcttttacatcttcatcattgtcttcataaattcatc 14089475  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 1840313 - 1840391
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  1840313 aggatgacgtggtagtgcctgacgtggcagatgatgctaacgtggcaaacttattgatgagtcacacagtgagagggac 1840391  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 14089092 - 14089170
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  14089092 aggatgacgtggtagtgcctgacgtggcagacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 14089170  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 13948498 - 13948420
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||||| |||||||||| ||||| || |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  13948498 aggatgacgtggcagtgcctgatgtggctgacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 13948420  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 14089705 - 14089627
Alignment:
Q  14 aggatgacgtgacagtgcctgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    ||||||||||| |||||||||| ||||| || |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  14089705 aggatgacgtggcagtgcctgatgtggctgacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 14089627  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 1841654 - 1841595
Alignment:
Q  33 tgacgtggcagatgatgctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1841654 tgacgtggcaaacgatgctgacgtggcaaacttattgatgagtcacacagtgagagggac 1841595  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 13947921 - 13947963
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  13947921 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 13947963  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 40745890 - 40745829
Alignment:
Q  184 ctttcttcatcttcttccttccacctcttttacatcttcatcattgtcttcataaattcatc 245  Q
    |||||||||||||||||| ||| |||||| | |||||||||||   | ||||||||||||||    
T  40745890 ctttcttcatcttcttccctcctcctcttctccatcttcatcaccatattcataaattcatc 40745829  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19083875 - 19083831
Alignment:
Q  181 tagctttcttcatcttcttccttccacctcttttacatcttcatc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19083875 tagctttcttcatcttcttccttccacctcttttacatcttcatc 19083831  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 19082840 - 19082882
Alignment:
Q  50 ctgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  19082840 ctgacgtggcaaacttattgatgagtcacacagtgagagggac 19082882  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 19084004 - 19083963
Alignment:
Q  51 tgacgtgacaaacttattgatgagtcacatagtgagagggac 92  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  19084004 tgacatgacaaacttattgatgagtcacacagtgagagggac 19083963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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